Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq40208 102 6e-17 seq302619 100 2e-16 seq20182 98.7 8e-16 seq1583 98.7 8e-16 seq23575 96.9 3e-15 seq55815 91.5 1e-13 seq167275 89.7 4e-13 seq136929 84.2 2e-11 seq155405 82.4 6e-11 >seq40208 Length=2036 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||| || ||| ||||||||| || ||||| || ||| ||| | || || Sbjct 1263 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTACGACCATCCTCG 1204 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || ||||||| ||| ||||| || || | ||| ||||| ||| Sbjct 1203 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGG 1144 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || || || | | | | ||| || ||||||||||| || || ||||| Sbjct 1143 ATCTTGGCTTTGACATTATCGATGGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTTT 1084 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||||||||| ||||| Sbjct 1083 CCTGTCAAAGTCTTCACAAAGATCTGCAT 1055 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| || || |||| || Sbjct 351 ACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTCCGGCCGTCCTCG 292 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| || | || ||| ||||||||||| | || ||||||||| Sbjct 291 AGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGG 232 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||| | || |||||||| Sbjct 231 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATCGTCTTT 172 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| ||||| ||||| Sbjct 171 CCGGTTAGGGTTTTCACGAAGATCTGCAT 143 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| ||||||| | |||||||| || || ||||||||| || ||||| ||| | Sbjct 825 CCACCCCTCAATCGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGCC 766 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || | |||| |||| || || |||||||| ||||| | ||| || || || || Sbjct 765 AGGGTCCTGCCGTCCTCCAACTGCTTACCGGCGAAGATCAATCTCTGCTGATCCGGGGGA 706 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCAC 45288 | |||||||||||| || || ||| | || | || | |||| | ||| || Sbjct 705 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCAATCGTGTCGGAGCTCTCAAC 647 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| | || || ||||| || || || |||||||| ||||| ||||| Sbjct 646 CTCGAGAGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAGATCTGCAT 599 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || ||||||||| |||||||||||| || || |||| || Sbjct 123 ACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTCCGGCCGTCCTCG 64 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244 || || ||||||||||| || | || ||| ||||||||||| | |||||||||||| Sbjct 63 AGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 7 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || || ||||||||| |||||||| || || | | |||| || Sbjct 579 ACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGCCAAGGTCCTACCGTCCTCG 520 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||||||||| ||||||| ||| || || || || | || ||||||||| Sbjct 519 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATCCCTTCCTTGTCCTGG 460 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||| | || |||||||| Sbjct 459 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATCGTCTTT 400 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| ||||| ||||| Sbjct 399 CCGGTTAGGGTTTTCACGAAGATCTGCAT 371 >seq302619 Length=692 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 || || || || ||| |||||| ||||||||||| || ||| ||| | || || Sbjct 538 ACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTCA 479 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | | ||| ||||| || || | |||||| || ||| | Sbjct 478 AGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTGA 419 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | |||| || ||| ||||||| ||| || || || Sbjct 418 ATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTTC 359 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || |||||||||||||||||||||||| Sbjct 358 CCAGTGAGAGTCTTCACAAAGATTTGCATG 329 >seq20182 Length=796 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| || || ||| |||||||| |||||||| || ||| ||| | || || Sbjct 164 ACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGGCCATCCTCA 223 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || |||||||| || || | || ||| ||||| || || | ||||||||||||| | Sbjct 224 AGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGA 283 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||||||||| | ||| || ||||| Sbjct 284 ATCTTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTT 343 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||| ||||| Sbjct 344 CCTGTCAAGGTCTTGACGAAGATCTGCAT 372 >seq1583 Length=2309 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG-TCGTC 45186 ||||||||||| ||| |||||| ||||| || ||||| | || || | || || || Sbjct 342 ACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTC-TGCAAGTGTCCTTCCATCCTC 284 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || || || || || ||||||| ||| ||||| || || | ||||||||| ||| Sbjct 283 AAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCTG 224 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 |||||| || || | | | |||| | ||||| |||| || || || || Sbjct 223 AATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGGTTTT 164 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 ||| || || ||||| ||||||||||||||| Sbjct 163 GCCGGTAAGGGTCTTGACAAAGATTTGCATG 133 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||||||||||||| || || | | || || || || Sbjct 565 GTGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTG 506 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| |||||||| | || ||| ||||| || || | |||||||| ||| || | | Sbjct 505 CTTTCCAGCGAATATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGAA-TCT 447 Query 45253 TTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 | |||| | | || | | || || ||| ||||||| || || ||||| || | Sbjct 446 TGGCTTTCACATTGTCAATCGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTCCCTG 387 Query 45312 TCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| || |||||||| ||||| Sbjct 386 TCAGAGTTTTGACAAAGATCTGCAT 362 >seq23575 Length=1941 Score = 96.9 bits (106), Expect = 3e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| || |||||||| || || |||| || || || |||||||| || Sbjct 1582 CTCCTTCTGGATATTGTAGTCAGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCAAA 1523 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || |||||| || ||||| | |||||||||||| | | || |||| || Sbjct 1522 GATGAGCCTCTGTTGATCTGGAGGGATGCCCTCCTTGTCCTGGA-TCTTGGCTTTGACGT 1464 Query 45265 CG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323 | | | | |||| | ||||||||| | ||| | |||||||| || || ||||||| Sbjct 1463 TGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGACGGTCTTGCCGGTAAGCGTCTTCA 1404 Query 45324 CAAAGATTTGCATGTTG 45340 ||||||| |||||| || Sbjct 1403 CAAAGATCTGCATGATG 1387 >seq55815 Length=911 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 || |||||||| ||| |||||| ||||| || ||||| ||| | | || || Sbjct 342 ACTAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCAACAAGTGTCCTTCCATCCTCA 283 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || ||||||| |||||||| || || | |||||||||||| | Sbjct 282 AGCTGCTTGCCTGCAAAAATCAACCTTTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGA 223 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | |||| | ||||| ||||| | || || ||| Sbjct 222 ATTTTAGCTTTCACATTATCAATGGTGTCAGAGCTTTCCACTTCCACAATGATGGTTTTG 163 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || || ||||| ||||||||||||||| Sbjct 162 CCGGTAAGGGTCTTGACAAAGATTTGCATG 133 >seq167275 Length=2206 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||| ||||| || ||||||||| |||||||| || |||| | | | || || Sbjct 597 ACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCCAGTGTCCTACCATCCTCA 656 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| || || || | || ||| ||||| || || | || || |||||| | Sbjct 657 AGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGA 716 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | |||| | ||||| |||| ||||| || || Sbjct 717 ATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATAGTTTTC 776 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||||||||||||||||||| Sbjct 777 CCTGTCAAAGTCTTCACAAAGATTTGCAT 805 >seq136929 Length=1332 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | | ||| | || | ||| || || ||||||||| || ||||||||| Sbjct 344 GCCACCACGAAGTCTGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGC 285 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || | |||| || || || |||||||| || || | || |||||| || ||||| Sbjct 284 GAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGTTGATCTGGAGG 225 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCA 45287 | |||||||||||| | | || |||| || | | | | |||| | ||| | Sbjct 224 GATGCCCTCCTTGTCCTGGA-TCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCGA 166 Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 | | | ||| | |||||||| || || |||||||||||||| |||||| Sbjct 165 CATAGAGGGTGACGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCATG 116 >seq155405 Length=1148 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || |||||| || || ||||| ||| || ||| | || || Sbjct 431 ACCAGGTGAAGAGTAGACTCCTTTTGGATATTGTAATCGGCAAGGGTGCGGCCATCCTCT 490 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| ||||| || || | || ||| || || || || | |||||||||||| Sbjct 491 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGTATGCCCTCCTTGTCCTGG 550 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | || || ||| ||||||| || || ||||| Sbjct 551 ATCTTTGCCTTGACATTATCGATTGTATCAGAACTCTCAACCTCCAATGTGATGGTCTTC 610 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || || |||||||| |||||||| |||||| Sbjct 611 CCTGTGAGAGTCTTAACAAAGATCTGCATG 640 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393519176941423