Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq40208 102 6e-17
seq302619 100 2e-16
seq20182 98.7 8e-16
seq1583 98.7 8e-16
seq23575 96.9 3e-15
seq55815 91.5 1e-13
seq167275 89.7 4e-13
seq136929 84.2 2e-11
seq155405 82.4 6e-11
>seq40208
Length=2036
Score = 102 bits (112), Expect = 6e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || ||| ||||||||| || ||||| || ||| ||| | || ||
Sbjct 1263 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTACGACCATCCTCG 1204
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || ||||||| ||| ||||| || || | ||| ||||| |||
Sbjct 1203 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGG 1144
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || || || | | | | ||| || ||||||||||| || || |||||
Sbjct 1143 ATCTTGGCTTTGACATTATCGATGGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTTT 1084
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| ||||||||||||||| |||||
Sbjct 1083 CCTGTCAAAGTCTTCACAAAGATCTGCAT 1055
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || || ||||||||| |||||||||||| || || |||| ||
Sbjct 351 ACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTCCGGCCGTCCTCG 292
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||||||||| || | || ||| ||||||||||| | || |||||||||
Sbjct 291 AGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGG 232
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||| ||||| | || ||||||||
Sbjct 231 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATCGTCTTT 172
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || || ||||| ||||| |||||
Sbjct 171 CCGGTTAGGGTTTTCACGAAGATCTGCAT 143
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169
||||| ||||||| | |||||||| || || ||||||||| || ||||| ||| |
Sbjct 825 CCACCCCTCAATCGGAGCACCAAGTGAAGGGTCGACTCCTTCTGGATATTGTAATCGGCC 766
Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229
|| | |||| |||| || || |||||||| ||||| | ||| || || || ||
Sbjct 765 AGGGTCCTGCCGTCCTCCAACTGCTTACCGGCGAAGATCAATCTCTGCTGATCCGGGGGA 706
Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCAC 45288
| |||||||||||| || || ||| | || | || | |||| | ||| ||
Sbjct 705 ATTCCCTCCTTGTCCTGGATCTTAGCCTTGA-CGTTGTCAATCGTGTCGGAGCTCTCAAC 647
Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
||| | || || ||||| || || || |||||||| ||||| |||||
Sbjct 646 CTCGAGAGTGATGGTCTTCCCGGTAAGGGTCTTCACGAAGATCTGCAT 599
Score = 86.0 bits (94), Expect = 5e-12
Identities = 89/117 (76%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || || ||||||||| |||||||||||| || || |||| ||
Sbjct 123 ACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTCCGGCCGTCCTCG 64
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCC 45244
|| || ||||||||||| || | || ||| ||||||||||| | ||||||||||||
Sbjct 63 AGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTGTCC 7
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| || || || ||||||||| |||||||| || || | | |||| ||
Sbjct 579 ACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGCCAAGGTCCTACCGTCCTCG 520
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||||||||| ||||||| ||| || || || || | || |||||||||
Sbjct 519 AGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATCCCTTCCTTGTCCTGG 460
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||| ||||| | || ||||||||
Sbjct 459 ATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATCGTCTTT 400
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || || ||||| ||||| |||||
Sbjct 399 CCGGTTAGGGTTTTCACGAAGATCTGCAT 371
>seq302619
Length=692
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|| || || || ||| |||||| ||||||||||| || ||| ||| | || ||
Sbjct 538 ACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTCA 479
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || || | | ||| ||||| || || | |||||| || ||| |
Sbjct 478 AGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTGA 419
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| ||| ||| || | | | |||| || ||| ||||||| ||| || || ||
Sbjct 418 ATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTTC 359
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| || ||||||||||||||||||||||||
Sbjct 358 CCAGTGAGAGTCTTCACAAAGATTTGCATG 329
>seq20182
Length=796
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| || || ||| |||||||| |||||||| || ||| ||| | || ||
Sbjct 164 ACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGGCCATCCTCA 223
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || |||||||| || || | || ||| ||||| || || | ||||||||||||| |
Sbjct 224 AGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGA 283
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | |||| | ||||||||| | ||| || |||||
Sbjct 284 ATCTTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTT 343
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| ||||| || ||||| |||||
Sbjct 344 CCTGTCAAGGTCTTGACGAAGATCTGCAT 372
>seq1583
Length=2309
Score = 98.7 bits (108), Expect = 8e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG-TCGTC 45186
||||||||||| ||| |||||| ||||| || ||||| | || || | || || ||
Sbjct 342 ACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTC-TGCAAGTGTCCTTCCATCCTC 284
Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246
|| || || || || || ||||||| ||| ||||| || || | ||||||||| |||
Sbjct 283 AAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCTG 224
Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306
|||||| || || | | | |||| | ||||| |||| || || || ||
Sbjct 223 AATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGGTTTT 164
Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
||| || || ||||| |||||||||||||||
Sbjct 163 GCCGGTAAGGGTCTTGACAAAGATTTGCATG 133
Score = 84.2 bits (92), Expect = 2e-11
Identities = 143/205 (70%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192
||| || ||| |||||||||||||||||| || || | | || || || ||
Sbjct 565 GTGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTG 506
Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252
||||| |||||||| | || ||| ||||| || || | |||||||| ||| || | |
Sbjct 505 CTTTCCAGCGAATATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGAA-TCT 447
Query 45253 TTGCTTAACCGCCGCCACGC-TGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311
| |||| | | || | | || || ||| ||||||| || || ||||| || |
Sbjct 446 TGGCTTTCACATTGTCAATCGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTCCCTG 387
Query 45312 TCAGAGTCTTCACAAAGATTTGCAT 45336
||||||| || |||||||| |||||
Sbjct 386 TCAGAGTTTTGACAAAGATCTGCAT 362
>seq23575
Length=1941
Score = 96.9 bits (106), Expect = 3e-15
Identities = 141/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Minus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| || |||||||| || || |||| || || || |||||||| ||
Sbjct 1582 CTCCTTCTGGATATTGTAGTCAGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCAAA 1523
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|| | || |||||| || ||||| | |||||||||||| | | || |||| ||
Sbjct 1522 GATGAGCCTCTGTTGATCTGGAGGGATGCCCTCCTTGTCCTGGA-TCTTGGCTTTGACGT 1464
Query 45265 CG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCA 45323
| | | | |||| | ||||||||| | ||| | |||||||| || || |||||||
Sbjct 1463 TGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGACGGTCTTGCCGGTAAGCGTCTTCA 1404
Query 45324 CAAAGATTTGCATGTTG 45340
||||||| |||||| ||
Sbjct 1403 CAAAGATCTGCATGATG 1387
>seq55815
Length=911
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|| |||||||| ||| |||||| ||||| || ||||| ||| | | || ||
Sbjct 342 ACTAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCAACAAGTGTCCTTCCATCCTCA 283
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || || || || ||||||| |||||||| || || | |||||||||||| |
Sbjct 282 AGCTGCTTGCCTGCAAAAATCAACCTTTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGA 223
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| || || | | | |||| | ||||| ||||| | || || |||
Sbjct 222 ATTTTAGCTTTCACATTATCAATGGTGTCAGAGCTTTCCACTTCCACAATGATGGTTTTG 163
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| || || ||||| |||||||||||||||
Sbjct 162 CCGGTAAGGGTCTTGACAAAGATTTGCATG 133
>seq167275
Length=2206
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||| ||||| || ||||||||| |||||||| || |||| | | | || ||
Sbjct 597 ACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCCAGTGTCCTACCATCCTCA 656
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||| || || || | || ||| ||||| || || | || || |||||| |
Sbjct 657 AGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTGA 716
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | |||| | ||||| |||| ||||| || ||
Sbjct 717 ATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATAGTTTTC 776
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| |||| |||||||||||||||||||||
Sbjct 777 CCTGTCAAAGTCTTCACAAAGATTTGCAT 805
>seq136929
Length=1332
Score = 84.2 bits (92), Expect = 2e-11
Identities = 158/230 (69%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168
|||||| | | ||| | || | ||| || || ||||||||| || |||||||||
Sbjct 344 GCCACCACGAAGTCTGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGC 285
Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228
|| | |||| || || || |||||||| || || | || |||||| || |||||
Sbjct 284 GAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGTTGATCTGGAGG 225
Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCA 45287
| |||||||||||| | | || |||| || | | | | |||| | ||| |
Sbjct 224 GATGCCCTCCTTGTCCTGGA-TCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCGA 166
Query 45288 CCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
| | | ||| | |||||||| || || |||||||||||||| ||||||
Sbjct 165 CATAGAGGGTGACGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCATG 116
>seq155405
Length=1148
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || || |||||| || || ||||| ||| || ||| | || ||
Sbjct 431 ACCAGGTGAAGAGTAGACTCCTTTTGGATATTGTAATCGGCAAGGGTGCGGCCATCCTCT 490
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| ||||| ||||| || || | || ||| || || || || | ||||||||||||
Sbjct 491 AGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGTATGCCCTCCTTGTCCTGG 550
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| ||| ||| || | | | || || ||| ||||||| || || |||||
Sbjct 551 ATCTTTGCCTTGACATTATCGATTGTATCAGAACTCTCAACCTCCAATGTGATGGTCTTC 610
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| || |||||||| |||||||| ||||||
Sbjct 611 CCTGTGAGAGTCTTAACAAAGATCTGCATG 640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 393519176941423
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