Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq40208 107 2e-18 seq302619 104 2e-17 seq37689 102 7e-17 seq167275 98.7 9e-16 seq16442 95.1 1e-14 seq155405 86.0 6e-12 >seq40208 Length=2036 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || || || |||||||| |||| || || ||| Sbjct 143 ATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACGATCACTCTCGAGGTCGAGAGCTCC 202 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| | || |||||||||||| | || ||||||||| Sbjct 203 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCCGACCAG 262 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || ||| | || ||| |||| || ||| || ||| Sbjct 263 CAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGGACTTTGGCCGACTACAAC 322 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || || || ||||| || ||||| || | || |||||||||| Sbjct 323 ATCCAGAAGGAGTCAACTCTCCACCTGGTGCTCCGTCTCAGGGGCGGTA 371 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||| ||| | || |||||||||||| | || || ||||| || || ||| | || Sbjct 7 GGACAAGGAGGGCATCCCTCCCGACCAGCAGAGGCTCATCTTCGCCGGAAAGCAGCTCGA 66 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| |||| || ||| || ||||| || || || || ||||| || ||||| || Sbjct 67 GGACGGCCGGACTTTGGCCGACTACAACATCCAGAAGGAGTCAACTCTCCACCTGGTGCT 126 Query 31405 TAGACTGAGGGGCGGTA 31421 | || |||||||||| Sbjct 127 CCGTCTCAGGGGCGGTA 143 >seq302619 Length=692 Score = 104 bits (114), Expect = 2e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| | || |||||| || Sbjct 102 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 161 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | ||| || ||||||||| | || || |||||| Sbjct 162 GACACCATCGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 221 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | || || || ||||| || ||| | || || | | | || | || || || Sbjct 222 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGAGGA-TGGACGCACCCTTGCTGACTACAA 280 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||| ||||||||||| || ||||| || ||||| Sbjct 281 TATTCAAAAGGAATCGACTCTACACCTGGTGCTCAGACT 319 >seq37689 Length=540 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||||| || ||||| || |||||| | || |||||| || Sbjct 375 ATGCAGATCTTCGTCAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 316 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | |||||| | ||| |||||||||||| | || || ||||| Sbjct 315 GACACCATTGATAATGTCAAAGCCAAAATCCACGACAAGGAAGGCATCCCCCCGGACCAA 256 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || || ||||| || ||| | || || || | || || || Sbjct 255 CAAAGGCTGATTTTTGCTGGTAAGCAGCTTGAGGATGGACACACCCTTGTTGACTACAAT 196 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| |||||||||||||| ||||| || ||||| | || |||| Sbjct 195 ATTCAAAAGGAATCGACTCTTCACCTGGTTCTCAGACTCCGCGGTGGTA 147 >seq167275 Length=2206 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || || |||||||| || |||||| |||| |||||| || Sbjct 1489 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 1430 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | ||||| || ||| | |||||||| || | || || ||||| Sbjct 1429 GACACTATTGACAATGTCAAGGCAAAGA-TCCAAGACAAGGAGGGAATCCCCCCAGACCA 1371 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACT--CTATGACTATGAGCGATTAT 31369 ||| | || || || |||||||| ||| | || ||| | | ||| || || || Sbjct 1370 GCAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACACT-TGCT-GACTAC 1313 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 |||||||||||||| || || || || ||||| |||||||| Sbjct 1312 AACATTCAAAAAGAGTCCACCCTCCACCTGGTGCTTAGACT 1272 >seq16442 Length=1968 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || |||||||| | || || || | Sbjct 213 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACGTTGGAGGTGGAGTCC 272 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || || | || |||||||| ||| | ||||| ||| Sbjct 273 TCCGACACCATCGACAATGTGAAGGCCAAGATCCAAGACAAGGAGGGCATCCCGCCGGAC 332 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || ||||| || |||||| | || ||| |||| | ||| || Sbjct 333 CAGCAGCGCCTCATCTTCGCCGGAAAACAGCTCGAGGACGGCCGGACTCTCGCCGACTAC 392 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || |||||||| || ||||| || Sbjct 393 AACATCCAGAAGGAGTCGACTCTCCACCTGGTGCT 427 >seq155405 Length=1148 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || |||||||| || || || || || |||||| | || || ||| ||| Sbjct 411 ATGCAGATCTTTGTAAAGACGCTTACTGGGAAGACAATCACCCTGGAGGTGGAAAGCTCC 352 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| || || ||||||||| || | || || || ||| Sbjct 351 GATACAATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 292 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || ||||||||||| ||| | ||| | || || ||| Sbjct 291 CAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTACAAC 232 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| ||||| || | || |||| || ||||| | || || Sbjct 231 ATTCAAAAGGAATCAACCTTGCACTTGGTTCTCCGACTGCGTGGTGG 185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 443965709910960