Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq155405 91.5 1e-13 seq23575 87.8 2e-12 seq167275 86.0 6e-12 >seq155405 Length=1148 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||| | || ||||||||||| ||||| || || | ||| | | ||| || Sbjct 658 AACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCGAGTGTCCGCCCGTCCTC 717 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||||| || |||||| ||||||| | ||| || || || || || || || ||||| Sbjct 718 AAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTG 777 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| ||| ||| | | || | ||||| | | || ||||||| ||| | ||||| Sbjct 778 GATCTTTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTT 837 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| || | ||||| || || || ||||| Sbjct 838 GCCTGTGAGGGTTTTCACAAAGATCTGCAT 867 >seq23575 Length=1941 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| |||||||| || || ||| |||| || | || ||||| ||||| ||||| || || Sbjct 1546 GTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGTTGATCTGGAGGGATGCCCTCCTT 1487 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || ||| | | || | ||||||| | ||||||||| | ||| || Sbjct 1486 GTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGAC 1427 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||||||| | ||| || || || || ||||| Sbjct 1426 GGTCTTGCCGGTAAGCGTCTTCACAAAGATCTGCAT 1391 >seq167275 Length=2206 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||||||||||||||| || || | ||| | ||| |||||||| || ||| Sbjct 1293 GTGGACTCTTTTTGAATGTTGTAGTCAGCAAGTGTTCGGCCGTCCTCGAGCTGCTTGCCA 1352 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| ||||||| | |||||| || || || || || || ||||| ||| ||| || Sbjct 1353 GCAAAGATCAGCCTTTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTG 1412 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | | || ||||| | ||| | |||||||| || | ||| Sbjct 1413 ACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTCTTGCCTGTGAGGGTT 1472 Query 139748 TTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 1473 TTCACAAAGATCTGCAT 1489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494060130869600