Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq314856 120 4e-22 >seq314856 Length=966 Score = 120 bits (132), Expect = 4e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 80088 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 80147 |||| ||| |||||||| | || | || || | |||| |||||| || ||| ||||| Sbjct 68 TTTGCCTCCCCCCTGATCAACATAACGGGCAGTATCATTAAAAACTCGCAGCATAGGAAT 127 Query 80148 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 80207 || ||||||||||| ||||| || || ||||| || ||| |||||||||| || Sbjct 128 GATGCCATTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGAATGTTGTG 187 Query 80208 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 80267 || || | ||| |||||||| || ||| ||| | || ||| || || ||||| Sbjct 188 AACAGAGACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTCAAAGTATC 247 Query 80268 ATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTA 80316 ||| ||||| || ||||||||||| ||||| | || || |||||| Sbjct 248 ATATATGCCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715367326247320