Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_004062.1
Length=119217
Score E
Sequences producing significant alignments: (Bits) Value
seq163152 89.7 4e-13
seq40208 89.7 4e-13
>seq163152
Length=1956
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
||||||||||| ||| |||||| || | ||||||||||| ||| || || | || ||
Sbjct 1740 CACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCGGCCAAAGTTCGGCCATCCTC 1799
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
||| || || ||||| || ||||| | ||| || || | || | || || || ||
Sbjct 1800 CAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTG 1859
Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078
|||| | ||||| || ||| || || ||| |||||| || | || || || |
Sbjct 1860 GATCTTGGCCTTGACGTTGTCAATGGTATC-AGAGCTCTCGACCTCGAGAGTGATCGTCT 1918
Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
| |||||||| ||||| || || || |||||
Sbjct 1919 TCCCGGTTAGGGTTTTGACGAAGATCTGCAT 1949
>seq40208
Length=2036
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959
||||||||||| || |||||| || | |||||||| | ||| || | |||| ||
Sbjct 580 CACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGCCAAGGTCCTACCGTCCTC 521
Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019
| || || ||||| || ||||| | ||| ||||| | || | ||||| || ||
Sbjct 520 GAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATCCCTTCCTTGTCCTG 461
Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078
|||| | ||||| || | | |||||| ||| |||||| || | || || || |
Sbjct 460 GATCTTGGCCTTGACGTTGTCGATGGTGTCGG-AGCTCTCGACCTCGAGAGTGATCGTCT 402
Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109
|||||||||| |||||||| || || |||||
Sbjct 401 TTCCGGTTAGGGTTTTCACGAAGATCTGCAT 371
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379867557119454
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |