Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq163152 89.7 4e-13 seq40208 89.7 4e-13 >seq163152 Length=1956 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| ||| |||||| || | ||||||||||| ||| || || | || || Sbjct 1740 CACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCGGCCAAAGTTCGGCCATCCTC 1799 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 ||| || || ||||| || ||||| | ||| || || | || | || || || || Sbjct 1800 CAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTG 1859 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| | ||||| || ||| || || ||| |||||| || | || || || | Sbjct 1860 GATCTTGGCCTTGACGTTGTCAATGGTATC-AGAGCTCTCGACCTCGAGAGTGATCGTCT 1918 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | |||||||| ||||| || || || ||||| Sbjct 1919 TCCCGGTTAGGGTTTTGACGAAGATCTGCAT 1949 >seq40208 Length=2036 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 42900 CACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTC 42959 ||||||||||| || |||||| || | |||||||| | ||| || | |||| || Sbjct 580 CACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGCCAAGGTCCTACCGTCCTC 521 Query 42960 CAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCT 43019 | || || ||||| || ||||| | ||| ||||| | || | ||||| || || Sbjct 520 GAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATCCCTTCCTTGTCCTG 461 Query 43020 GATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCGTTATAGTTT 43078 |||| | ||||| || | | |||||| ||| |||||| || | || || || | Sbjct 460 GATCTTGGCCTTGACGTTGTCGATGGTGTCGG-AGCTCTCGACCTCGAGAGTGATCGTCT 402 Query 43079 TTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||||||||| |||||||| || || ||||| Sbjct 401 TTCCGGTTAGGGTTTTCACGAAGATCTGCAT 371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379867557119454