Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq1583 98.7 7e-16
seq302619 93.3 3e-14
seq163152 84.2 2e-11
>seq1583
Length=2309
Score = 98.7 bits (108), Expect = 7e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220
||||||||||| || || || ||||||||||| ||| | ||| | || || | ||
Sbjct 564 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTGC 505
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| |||||| |||| | | || ||||| || || || || || || ||| |||
Sbjct 504 TTTCCAGCGAATATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGAATCTTG 445
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
|| ||| | || || ||||| | | ||||| || || || ||||| || ||||||
Sbjct 444 GCTTTCACATTGTCAATCGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTCCCTGTC 385
Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364
|||||||| ||||| || ||||||
Sbjct 384 AGAGTTTTGACAAAGATCTGCATA 361
>seq302619
Length=692
Score = 93.3 bits (102), Expect = 3e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
||||||||||||||||| || ||||| ||||||||||| || | | | || ||
Sbjct 538 ACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTCA 479
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || || ||||| | || | | || ||||| ||| || || ||||| || |
Sbjct 478 AGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTGA 419
Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
|| ||||| ||| || | || ||||| || | | || || || ||||| ||||||||
Sbjct 418 ATCTTTGC-CTTCACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTT 360
Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || ||||| || ||||| ||||||||
Sbjct 359 CCCAGTGAGAGTCTTCACAAAGATTTGCAT 330
>seq163152
Length=1956
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214
|| || ||||||||||| || || || ||||||||||| || | | |||| ||
Sbjct 1285 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTACGACCGTCCTCG 1344
Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274
| || ||||| || | ||||| | ||| ||||| ||| || || || || ||
Sbjct 1345 AGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGGATCCCCTCCTTATCCTGG 1404
Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334
|| ||| || ||| | || |||||||| | || || || || || ||||| ||
Sbjct 1405 ATCTTGGCTTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAAAGTGATGGTCTTG 1464
Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363
||||||| ||| || |||||||| |||||
Sbjct 1465 CCTGTCAAAGTCTTCACAAAAATCTGCAT 1493
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 360752739451383
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |