Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq1583 98.7 7e-16 seq302619 93.3 3e-14 seq163152 84.2 2e-11 >seq1583 Length=2309 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || ||||||||||| ||| | ||| | || || | || Sbjct 564 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCAAGAGTCCTCCCATCCTCAAGCTGC 505 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| |||| | | || ||||| || || || || || || ||| ||| Sbjct 504 TTTCCAGCGAATATGAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTGAATCTTG 445 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || ||| | || || ||||| | | ||||| || || || ||||| || |||||| Sbjct 444 GCTTTCACATTGTCAATCGTATCTGAACTCTCTACCTCCAATGTTATGGTCTTCCCTGTC 385 Query 15341 AGAGTTTTTACAAAAATTTGCATA 15364 |||||||| ||||| || |||||| Sbjct 384 AGAGTTTTGACAAAGATCTGCATA 361 >seq302619 Length=692 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 ||||||||||||||||| || ||||| ||||||||||| || | | | || || Sbjct 538 ACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTCA 479 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || ||||| | || | | || ||||| ||| || || ||||| || | Sbjct 478 AGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTGA 419 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| || | || ||||| || | | || || || ||||| |||||||| Sbjct 418 ATCTTTGC-CTTCACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTT 360 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || ||||| |||||||| Sbjct 359 CCCAGTGAGAGTCTTCACAAAGATTTGCAT 330 >seq163152 Length=1956 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||||||||| || || || ||||||||||| || | | |||| || Sbjct 1285 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTACGACCGTCCTCG 1344 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || ||||| || | ||||| | ||| ||||| ||| || || || || || Sbjct 1345 AGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGGATCCCCTCCTTATCCTGG 1404 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || ||| | || |||||||| | || || || || || ||||| || Sbjct 1405 ATCTTGGCTTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAAAGTGATGGTCTTG 1464 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||||| ||| || |||||||| ||||| Sbjct 1465 CCTGTCAAAGTCTTCACAAAAATCTGCAT 1493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 360752739451383