Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq163152 89.7 3e-13 >seq163152 Length=1956 Score = 89.7 bits (98), Expect = 3e-13 Identities = 153/217 (71%), Gaps = 14/217 (6%) Strand=Plus/Plus Query 33160 CACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT--TG--GT 33215 ||||||||||| |||||||| || || ||||||||||| | ||| |||| || | Sbjct 1512 CACCAAATGCAGAGTCGACTCCTTCTGGATATTGTAATCCG-CAA---GAGTCCTGCCAT 1567 Query 33216 CATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTT 33275 | ||||||||||| ||| || || || | ||||| |||| || || ||||| || | Sbjct 1568 CCTCCAATTGCTTACCAGCGAAAATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTAT 1627 Query 33276 C---GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTA 33332 | | | | ||| || || | | |||||||||| | | ||| || ||||| | Sbjct 1628 CCTGGATCTTGGCC---TTGACGTTATCAATCGTGTCGGAGCTCTCAACTTCGAGAGTGA 1684 Query 33333 TCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 | || || || || ||||| || ||||| |||||||| Sbjct 1685 TTGTCTTCCCGGTGAGAGTCTTCACGAAGATTTGCAT 1721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317522078782374