Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq23575 104 2e-17
seq136929 100 2e-16
seq1583 91.5 1e-13
seq40208 89.7 4e-13
seq55815 87.8 1e-12
seq167275 84.2 2e-11
>seq23575
Length=1941
Score = 104 bits (114), Expect = 2e-17
Identities = 140/194 (72%), Gaps = 1/194 (1%)
Strand=Plus/Minus
Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989
||| || || |||||||||||| || ||| |||| ||||| || ||||| || ||
Sbjct 1811 CTCCTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAA 1752
Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATC-TGAAATTTTTTGTTTGACCA 44048
||||||| |||||| ||| | || | ||| || ||||| ||||| || ||||||
Sbjct 1751 GATCAACCTTTGCTGATCCGGCGGGATACCCTCCTTATCTTGAAACCTTGGCTTTGACAT 1692
Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108
| ||| ||||| | |||||| || | || || || || || || ||||||||||
Sbjct 1691 TGTCAATGGTATCGGAGCTCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAAGTCTTCA 1632
Query 44109 CAAATATTTGCATG 44122
|||| || ||||||
Sbjct 1631 CAAAAATCTGCATG 1618
>seq136929
Length=1332
Score = 100 bits (110), Expect = 2e-16
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAA 43989
||| || || |||||||||||| || ||| |||| ||||| || ||||| || ||
Sbjct 536 CTCCTTCTGGATATTATAATCGGCCAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAA 477
Query 43990 TATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCAT 44049
||||||| |||||| ||| | || | ||| || |||||| || || |||||| |
Sbjct 476 GATCAACCTTTGCTGATCCGGCGGGATACCCTCCTTATCTTGAACCTTGGCTTTGACATT 417
Query 44050 AGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCAC 44109
||| ||||| | |||||| || | || || || || || || |||||||||||
Sbjct 416 GTCAATGGTATCAGAGCTCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAAAGTCTTCAC 357
Query 44110 AAATATTTGCATG 44122
||| || ||||||
Sbjct 356 AAAAATCTGCATG 344
>seq1583
Length=2309
Score = 91.5 bits (100), Expect = 1e-13
Identities = 149/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT-CATCGT 43970
|||||| || || ||| ||| |||||||||||||| || | || || | | |||| |
Sbjct 343 CACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTC-TGCAAGTGTCCTTCCATCCT 285
Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030
| | || || |||||||| ||||||| |||||||| | || | ||| || |||||
Sbjct 284 CAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCCT 225
Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090
|||||| ||| || || | | || || | ||||| || | || || ||||
Sbjct 224 GAATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGGTTT 165
Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
| ||||| | ||||| ||||| |||||||||
Sbjct 164 TGCCGGTAAGGGTCTTGACAAAGATTTGCATG 133
>seq40208
Length=2036
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972
||||| || || ||| ||| || || ||||| ||||| | ||| |||| ||
Sbjct 1263 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTACGACCATCCTCG 1204
Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032
| || || |||||||| ||||||| ||||||||| | || | |||||| |||||
Sbjct 1203 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGG 1144
Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092
|| || |||||| || | | ||||| | |||||| || | || || || ||
Sbjct 1143 ATCTTGGCTTTGACATTATCGATGGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTTT 1084
Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || |||||||||||||| || |||||
Sbjct 1083 CCTGTCAAAGTCTTCACAAAGATCTGCAT 1055
Score = 86.0 bits (94), Expect = 4e-12
Identities = 147/211 (70%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGT 43970
|||||| || || ||| ||| || || ||||| ||||| | | | || |||| |
Sbjct 1036 CACCAAGTGCAGGGTGGACTCCTTCTGGATATTGTAATCCGCAAGAGTCCTGC-CATCCT 978
Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030
||||||| ||||| || || ||||||| ||||| ||| | || | ||||| |||||
Sbjct 977 CCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCCT 918
Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090
|| || ||||| || ||| ||||| | ||| || || | ||||| || |
Sbjct 917 GGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCAACCTCCAGGGTAATGGTCT 858
Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
| || || ||||||||||| ||||| |||||
Sbjct 857 TCCCTGTCAAAGTCTTCACGAATATCTGCAT 827
>seq55815
Length=911
Score = 87.8 bits (96), Expect = 1e-12
Identities = 148/212 (70%), Gaps = 2/212 (1%)
Strand=Plus/Minus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT-CATCGT 43970
||| || || || ||| ||| |||||||||||||| || || || | | |||| |
Sbjct 343 CACTAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTC-AACAAGTGTCCTTCCATCCT 285
Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030
| | || || |||||||| ||||||| ||| ||||| | || | ||| || || |||
Sbjct 284 CAAGCTGCTTGCCTGCAAAAATCAACCTTTGTTGGTCTGGGGGAATACCCTCCTTGTCTT 225
Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090
|||||| ||| || || ||| || || | ||||| || || | || ||||
Sbjct 224 GAATTTTAGCTTTCACATTATCAATGGTGTCAGAGCTTTCCACTTCCACAATGATGGTTT 165
Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
| ||||| | ||||| ||||| |||||||||
Sbjct 164 TGCCGGTAAGGGTCTTGACAAAGATTTGCATG 133
>seq167275
Length=2206
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCT--CATCG 43969
||||||||| || || ||| || || || || ||||| | | || | || ||||
Sbjct 596 CACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATC-TGCCAGTGTC-CTACCATCC 653
Query 43970 TCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCT 44029
|| | || ||||||||||| || | || |||||||| | || | |||||||| ||
Sbjct 654 TCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 713
Query 44030 GAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTT 44089
||| || ||||| || ||| || |||| ||||| || | ||||| |||
Sbjct 714 TGAATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATAGTT 773
Query 44090 TTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
|| || || |||||||||||||| ||||||||
Sbjct 774 TTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 805
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 353380291016124
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |