Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq40208 100 2e-16
seq302619 95.1 1e-14
seq163152 86.0 5e-12
seq20182 82.4 6e-11
>seq40208
Length=2036
Score = 100 bits (110), Expect = 2e-16
Identities = 154/214 (72%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCC 48574
||| ||||| || || |||||| || ||||||||||||||||| ||| || |||||
Sbjct 580 CACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGCCAA-GGTC-CTACCGTCC 523
Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634
|| |||||||| ||| || | || || | ||||||||| || | | ||||||||||
Sbjct 522 TCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATCCCTTCCTTGTCC 463
Query 48635 ATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692
|| || ||||| | | || ||||| |||| ||| ||||| || || |
Sbjct 462 TGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTCGACCTCGAGAGTGATCG 405
Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
| || ||||| || |||||||| || ||||||||
Sbjct 404 TCTTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 371
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577
|| || ||||| ||| |||||| || || ||||||||||||| || | |||||
Sbjct 1263 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTACGACCATCCTCG 1204
Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637
|||||||| || | | || || | |||||| ||| || | || |||||| |||
Sbjct 1203 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGG 1144
Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697
|| || |||| | | |||||||| | | |||| ||| | || ||||| ||
Sbjct 1143 ATCTTGGCTTTGACATTATCGATGGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTTT 1084
Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|| || | ||| |||||||| |||||||||
Sbjct 1083 CCTGTCAAAGTCTTCACAAAGATCTGCATC 1054
>seq302619
Length=692
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
|||||||||||| ||| |||||||||||||||||||||||||| || | |||||
Sbjct 539 CACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTC 480
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||| || | | || | | |||||| || || | || || || |||
Sbjct 479 AAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTG 420
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
||| || ||| | | ||||| || | | ||| ||| | |||||||||||
Sbjct 419 AATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTT 360
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| |||||||| |||||||| || |||||
Sbjct 359 CCCAGTGAGAGTCTTCACAAAGATTTGCAT 330
>seq163152
Length=1956
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577
|| || ||||| ||| |||||| ||||||||||||||||||| || |||||||
Sbjct 1285 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTACGACCGTCCTCG 1344
Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637
|||||||| ||| | | || || | ||||| ||| || | | ||||| |||
Sbjct 1345 AGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGGATCCCCTCCTTATCCTGG 1404
Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697
|| || |||| | | |||||||| | ||| ||| | || ||||| ||
Sbjct 1405 ATCTTGGCTTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAAAGTGATGGTCTTG 1464
Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727
|| || | ||| ||||||||||||||||||
Sbjct 1465 CCTGTCAAAGTCTTCACAAAAATCTGCATC 1494
>seq20182
Length=796
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| |||||||| ||| ||||| || ||||||||||| |||| || | |||||
Sbjct 163 CACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGGCCATCCTC 222
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
|||||||| ||| | | || | | |||||| || || | || |||||||||
Sbjct 223 AAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTG 282
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
||| || ||||| | | ||||| || | ||||||| ||| | || ||||| ||
Sbjct 283 AATCTTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTT 342
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || | || || || || ||||||||
Sbjct 343 TCCTGTCAAGGTCTTGACGAAGATCTGCAT 372
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419592081481163
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |