Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq40208 100 2e-16 seq302619 95.1 1e-14 seq163152 86.0 5e-12 seq20182 82.4 6e-11 >seq40208 Length=2036 Score = 100 bits (110), Expect = 2e-16 Identities = 154/214 (72%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCC 48574 ||| ||||| || || |||||| || ||||||||||||||||| ||| || ||||| Sbjct 580 CACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGCCAA-GGTC-CTACCGTCC 523 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| ||| || | || || | ||||||||| || | | |||||||||| Sbjct 522 TCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGGATCCCTTCCTTGTCC 463 Query 48635 ATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGG 48692 || || ||||| | | || ||||| |||| ||| ||||| || || | Sbjct 462 TGGATCTTGGCCTTGACGTTGTCG--ATGGTGTCGGAGCTCTCGACCTCGAGAGTGATCG 405 Query 48693 TTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||| || |||||||| || |||||||| Sbjct 404 TCTTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 371 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| || || ||||||||||||| || | ||||| Sbjct 1263 ACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGCCAGGGTACGACCATCCTCG 1204 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| || | | || || | |||||| ||| || | || |||||| ||| Sbjct 1203 AGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCCTTATCCTGG 1144 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || |||| | | |||||||| | | |||| ||| | || ||||| || Sbjct 1143 ATCTTGGCTTTGACATTATCGATGGTATCCGAACTCTCCACCTCCAAAGTGATGGTCTTT 1084 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || | ||| |||||||| ||||||||| Sbjct 1083 CCTGTCAAAGTCTTCACAAAGATCTGCATC 1054 >seq302619 Length=692 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 |||||||||||| ||| |||||||||||||||||||||||||| || | ||||| Sbjct 539 CACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTC 480 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| || | | || | | |||||| || || | || || || ||| Sbjct 479 AAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTG 420 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||| | | ||||| || | | ||| ||| | ||||||||||| Sbjct 419 AATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTT 360 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || |||||||| |||||||| || ||||| Sbjct 359 CCCAGTGAGAGTCTTCACAAAGATTTGCAT 330 >seq163152 Length=1956 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 || || ||||| ||| |||||| ||||||||||||||||||| || ||||||| Sbjct 1285 ACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGGGTACGACCGTCCTCG 1344 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 |||||||| ||| | | || || | ||||| ||| || | | ||||| ||| Sbjct 1345 AGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGGATCCCCTCCTTATCCTGG 1404 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || |||| | | |||||||| | ||| ||| | || ||||| || Sbjct 1405 ATCTTGGCTTTGACATTATCAATGGTATCCGAGCTCTCAACCTCCAAAGTGATGGTCTTG 1464 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || || | ||| |||||||||||||||||| Sbjct 1465 CCTGTCAAAGTCTTCACAAAAATCTGCATC 1494 >seq20182 Length=796 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| |||||||| ||| ||||| || ||||||||||| |||| || | ||||| Sbjct 163 CACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGGCCATCCTC 222 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| | | || | | |||||| || || | || ||||||||| Sbjct 223 AAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTG 282 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||||| | | ||||| || | ||||||| ||| | || ||||| || Sbjct 283 AATCTTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTT 342 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || | || || || || |||||||| Sbjct 343 TCCTGTCAAGGTCTTGACGAAGATCTGCAT 372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419592081481163