Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq133998 113 2e-20 seq23138 98.7 5e-16 seq149849 96.9 2e-15 seq318109 95.1 6e-15 seq165280 95.1 6e-15 seq120491 95.1 6e-15 seq12796 93.3 2e-14 seq169221 91.5 8e-14 seq237264 86.0 3e-12 >seq133998 Length=611 Score = 113 bits (124), Expect = 2e-20 Identities = 89/105 (85%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 |||| |||| ||||| |||||||| | | |||||||| ||||||||||||||||||||| Sbjct 152 AATAGAAAAACAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 210 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC-GTCGACGATTGTGAT 11544 |||||||| |||| |||||||||| |||| || || | |||||| Sbjct 211 GACGCTCTAACCAGCTGAGCTAATAGGCCAGTTGATGCCTGTGAT 255 >seq23138 Length=384 Score = 98.7 bits (108), Expect = 5e-16 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| | |||||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 112 AAAACAAAAAATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 171 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 172 GCTCTAACCAGCTGAGCTAATAGGCC 197 >seq149849 Length=657 Score = 96.9 bits (106), Expect = 2e-15 Identities = 75/90 (83%), Gaps = 4/90 (4%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| | |||||||| | | |||||||| |||||||||||||||||||| Sbjct 274 AATAAAAAA----AGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCAC 329 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| |||| |||||||||| ||||| Sbjct 330 GACGCTCTAACCAGCTGAGCTAATAGGCCG 359 >seq318109 Length=1151 Score = 95.1 bits (104), Expect = 6e-15 Identities = 71/83 (86%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| ||||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 1071 AAAAAT--AATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 1128 Query 11505 CTCTRACCAACTGAGCTAATGGG 11527 |||| |||| |||||||||| || Sbjct 1129 CTCTAACCAGCTGAGCTAATAGG 1151 >seq165280 Length=911 Score = 95.1 bits (104), Expect = 6e-15 Identities = 85/105 (81%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 11428 GAAATATAGAATTA-ATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACC 11484 ||||||| || | ||||||| | ||| |||||||| | | |||||||| |||| Sbjct 417 GAAATATGTAAAAAGATAAAAATTAAAAAAATGGCCCATACAGGTCTCGAACCTGTGACC 358 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 357 TTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 313 >seq120491 Length=635 Score = 95.1 bits (104), Expect = 6e-15 Identities = 82/102 (80%), Gaps = 3/102 (3%) Strand=Plus/Plus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||||| || | | ||||| || |||||||| | | |||||||| ||||||| Sbjct 132 GAAATATGTAAAAAGTTAAAAA---AAGTGGCCCATACAGGTCTCGAACCTGTGACCTTC 188 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| |||| |||||||||| |||| Sbjct 189 GCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 230 >seq12796 Length=846 Score = 93.3 bits (102), Expect = 2e-14 Identities = 81/100 (81%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489 ||| ||||| |||||| | || ||||||||| | | |||||||| |||||||||| Sbjct 695 AATTTAGAAA-AATAAATTAATAATGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGC 753 Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| |||||||||| | |||| |||||||||| |||| Sbjct 754 GTTATTTGCACGACGCTTTAACCAGCTGAGCTAATAGGCC 793 >seq169221 Length=937 Score = 91.5 bits (100), Expect = 8e-14 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 11 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 69 >seq237264 Length=382 Score = 86.0 bits (94), Expect = 3e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||||||||||| |||| |||||||||| |||| Sbjct 370 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 312 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 260461304079388