Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq133998 113 2e-20
seq23138 98.7 5e-16
seq149849 96.9 2e-15
seq318109 95.1 6e-15
seq165280 95.1 6e-15
seq120491 95.1 6e-15
seq12796 93.3 2e-14
seq169221 91.5 8e-14
seq237264 86.0 3e-12
>seq133998
Length=611
Score = 113 bits (124), Expect = 2e-20
Identities = 89/105 (85%), Gaps = 2/105 (2%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|||| |||| ||||| |||||||| | | |||||||| |||||||||||||||||||||
Sbjct 152 AATAGAAAAACAAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 210
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC-GTCGACGATTGTGAT 11544
|||||||| |||| |||||||||| |||| || || | ||||||
Sbjct 211 GACGCTCTAACCAGCTGAGCTAATAGGCCAGTTGATGCCTGTGAT 255
>seq23138
Length=384
Score = 98.7 bits (108), Expect = 5e-16
Identities = 73/86 (85%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|||| | |||||||||||| | | |||||||| |||||||||||||||||||||||
Sbjct 112 AAAACAAAAAATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGAC 171
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||| |||||||||| ||||
Sbjct 172 GCTCTAACCAGCTGAGCTAATAGGCC 197
>seq149849
Length=657
Score = 96.9 bits (106), Expect = 2e-15
Identities = 75/90 (83%), Gaps = 4/90 (4%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
||||||||| | |||||||| | | |||||||| ||||||||||||||||||||
Sbjct 274 AATAAAAAA----AGTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCAC 329
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530
|||||||| |||| |||||||||| |||||
Sbjct 330 GACGCTCTAACCAGCTGAGCTAATAGGCCG 359
>seq318109
Length=1151
Score = 95.1 bits (104), Expect = 6e-15
Identities = 71/83 (86%), Gaps = 2/83 (2%)
Strand=Plus/Plus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
|||||| ||||||||||| | | |||||||| ||||||||||||||||||||||||
Sbjct 1071 AAAAAT--AATTGGCCCATACAGGTCTCGAACCTGTGACCTTCGCGTTATTAGCACGACG 1128
Query 11505 CTCTRACCAACTGAGCTAATGGG 11527
|||| |||| |||||||||| ||
Sbjct 1129 CTCTAACCAGCTGAGCTAATAGG 1151
>seq165280
Length=911
Score = 95.1 bits (104), Expect = 6e-15
Identities = 85/105 (81%), Gaps = 3/105 (3%)
Strand=Plus/Minus
Query 11428 GAAATATAGAATTA-ATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACC 11484
||||||| || | ||||||| | ||| |||||||| | | |||||||| ||||
Sbjct 417 GAAATATGTAAAAAGATAAAAATTAAAAAAATGGCCCATACAGGTCTCGAACCTGTGACC 358
Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||||||| |||| |||||||||| ||||
Sbjct 357 TTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 313
>seq120491
Length=635
Score = 95.1 bits (104), Expect = 6e-15
Identities = 82/102 (80%), Gaps = 3/102 (3%)
Strand=Plus/Plus
Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487
||||||| || | | ||||| || |||||||| | | |||||||| |||||||
Sbjct 132 GAAATATGTAAAAAGTTAAAAA---AAGTGGCCCATACAGGTCTCGAACCTGTGACCTTC 188
Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||||||||||||||||||||| |||| |||||||||| ||||
Sbjct 189 GCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 230
>seq12796
Length=846
Score = 93.3 bits (102), Expect = 2e-14
Identities = 81/100 (81%), Gaps = 1/100 (1%)
Strand=Plus/Plus
Query 11430 AATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGC 11489
||| ||||| |||||| | || ||||||||| | | |||||||| ||||||||||
Sbjct 695 AATTTAGAAA-AATAAATTAATAATGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGC 753
Query 11490 GTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||| |||||||||| | |||| |||||||||| ||||
Sbjct 754 GTTATTTGCACGACGCTTTAACCAGCTGAGCTAATAGGCC 793
>seq169221
Length=937
Score = 91.5 bits (100), Expect = 8e-14
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| ||||||||||||||||||||||||||||| |||| |||||||||| ||||
Sbjct 11 TCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 69
>seq237264
Length=382
Score = 86.0 bits (94), Expect = 3e-12
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| |||||||||||||||||||||||||||| |||| |||||||||| ||||
Sbjct 370 TCGAACCTGTGACCTTCGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATAGGCC 312
Lambda K H
0.638 0.409 0.919
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 260461304079388
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |