Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq161087 159 5e-35 seq84719 152 8e-33 seq253465 147 3e-31 seq152316 141 1e-29 seq73637 134 2e-27 >seq161087 Length=1746 Score = 159 bits (176), Expect = 5e-35 Identities = 180/241 (75%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| || || || ||| ||||||| ||||| || ||| Sbjct 1191 GATAACATCCAGGGCATCACCAAGCCCGCCATTCGACGTTTGGCTCGCCGTGGCGGCGTC 1132 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| ||||||| | |||||||||||| | | ||| | |||||||| || || Sbjct 1131 AAGCGGATCTCTGGTCTAATCTATGAAGAGACCAGAGGTGTCCTCAAGATCTTTCTAGAG 1072 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| || || ||||| ||||||||| | ||||| |||||| || Sbjct 1071 AACGTCATCCGTGACGCCGTCACTTATACTGAGCACGCTCGCAGGAAGACCGTCACCGCC 1012 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| |||||||||| ||||| | || || | | | ||||| ||||| ||||| Sbjct 1011 ATGGACGTCGTCTATGCTTTGAAGAGACAGGGAAGGACCCTCTATGGATTTGGGGGTTAA 952 Query 16700 T 16700 | Sbjct 951 T 951 >seq84719 Length=991 Score = 152 bits (168), Expect = 8e-33 Identities = 182/247 (74%), Gaps = 0/247 (0%) Strand=Plus/Plus Query 16453 TCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGG 16512 ||| || || |||||||| || ||||||||||| || || || ||| ||||||| | || Sbjct 452 TCTCCGGGACAACATCCAGGGCATCACCAAGCCCGCCATTCGCCGTTTGGCTCGCAGAGG 511 Query 16513 TGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTT 16572 || ||||||||| ||||||| | |||||||||||| | | ||| | |||||||| Sbjct 512 CGGCGTCAAGCGTATCTCTGGTCTCATCTATGAAGAGACCAGAGGTGTCCTCAAGATCTT 571 Query 16573 CCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGT 16632 ||| ||| ||| |||| ||| || || || || ||||||||| | ||||| || Sbjct 572 TCTCGAGAACGTCATCCGTGACGCCGTCACTTACACTGAGCACGCTCGCAGGAAGACCGT 631 Query 16633 CACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 |||| |||||||| | |||||||| ||||| | || || | | | ||||| ||||| Sbjct 632 CACCGCCATGGATGTTGTCTATGCTTTGAAGAGGCAGGGAAGGACTCTCTATGGATTTGG 691 Query 16693 AAGTTAA 16699 ||||| Sbjct 692 GGGTTAA 698 >seq253465 Length=419 Score = 147 bits (162), Expect = 3e-31 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| ||||| || ||| ||||||| | || || ||| Sbjct 49 GATAACATCCAGGGCATCACCAAGCCTGCTATTCGCCGTTTGGCTCGCAGAGGCGGCGTC 108 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| || | |||||||||||| | | || | ||||||||||| || Sbjct 109 AAGCGTATCTCCGGTCTCATCTATGAAGAGACCAGAGGCGTCCTCAAGATCTTCCTTGAG 168 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| || || ||| ||||||||||| | |||||||||||| || Sbjct 169 AACGTCATCCGTGACGCCGTCACCTACACCGAGCACGCCCGGAGGAAGACTGTCACCGCC 228 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTA 16698 ||||| |||| ||||| | || | || || | | | |||||||| ||| |||| Sbjct 229 ATGGACGTCGTGTATGCTCTCAAGAGGCAGGGAAGGACCCTCTATGGTTTCGGAGGTTA 287 >seq152316 Length=753 Score = 141 bits (156), Expect = 1e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||| ||||| || ||||| ||| ||||||| | ||||| ||| Sbjct 83 GATAACATCCAGGGCATCACTAAGCCCGCCATCCGCCGTTTGGCTCGCAGAGGTGGCGTC 142 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| |||| || | |||||||||| | | | || | |||||||||||| | Sbjct 143 AAGCGTATCTCCGGTCTCATCTATGAAGAAACCAGAGGCGTCCTCAAGATCTTCCTCGAA 202 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| || || ||| || |||||||| | ||||| |||||| || Sbjct 203 AACGTCATCCGTGACGCCGTCACCTACACTGAGCACGCCCGGAGGAAGACCGTCACCGCC 262 Query 16640 ATGGATATCGTCTATGCATTGAA 16662 ||||| |||||||||| ||||| Sbjct 263 ATGGACGTCGTCTATGCTTTGAA 285 >seq73637 Length=2662 Score = 134 bits (148), Expect = 2e-27 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 ||||||||||| || ||||||||||| || || || ||| ||||||| | || || || Sbjct 1808 GATAACATCCAGGGCATCACCAAGCCCGCCATTCGCCGTTTGGCTCGCAGAGGCGGCGTG 1749 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| ||||||| | |||||||||||| | | || | |||||||||||| | Sbjct 1748 AAGCGTATCTCTGGTCTCATCTATGAAGAGACCAGGGGCGTCCTCAAGATCTTCCTCGAA 1689 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| |||| ||| || || ||| || |||||||| | ||||| |||||| || Sbjct 1688 AACGTCATCCGTGACGCCGTCACCTACACTGAGCACGCCCGGAGGAAGACAGTCACCGCC 1629 Query 16640 ATGGATATCGTCTATGC 16656 ||||| |||||||||| Sbjct 1628 ATGGACGTCGTCTATGC 1612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 78779729806959