Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq40208 95.1 1e-14 seq104817 93.3 4e-14 seq21874 93.3 4e-14 seq136929 89.7 4e-13 seq167078 87.8 2e-12 seq302619 86.0 5e-12 >seq40208 Length=2036 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| |||| || |||| |||||| | | Sbjct 371 ATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACGATCACTCTCGAGGTCGAGAGCTCC 430 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 431 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCAGATCAG 490 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| |||| | || ||| ||||| ||||| || | || | | | ||||| ||| Sbjct 491 CAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAGGACGGTAGGACCTTGGCTGATTACAAC 550 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || || | ||||| ||| Sbjct 551 ATCCAGAAGGAGTCAACCCTCCATTTGGTG 580 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| |||| || |||| |||||| | | Sbjct 143 ATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACGATCACTCTCGAGGTCGAGAGCTCC 202 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| ||||| || |||||||| || Sbjct 203 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCCGACCAG 262 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||||| || || | || ||| ||||| ||||| || Sbjct 263 CAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAGGA 297 >seq104817 Length=483 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/143 (75%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| |||||||| ||||| ||||| ||||||||||||| | || ||||| | ||| Sbjct 223 GACAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAA 282 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| ||| | | |||||||| || |||||||| || || | || | ||||| Sbjct 283 GATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTGTTG 342 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || ||||| ||||| ||||| || Sbjct 343 AGGTTGAGGGGAGGAACTATGAT 365 >seq21874 Length=1446 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/143 (75%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || || |||||||| ||||| |||||||||||| |||||| | ||| |||||| | ||| Sbjct 1399 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 1340 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| |||| | ||||| ||||| ||||| || || || |||| |||| ||| Sbjct 1339 GATGGAAGAACTCTTGCAGATTACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTA 1280 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || |||| || || ||||| || Sbjct 1279 AGGCTGAGGGGTGGAACTATGAT 1257 >seq136929 Length=1332 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || |||| || || | | ||| || | |||||| | | Sbjct 117 ATGCAGATCTTTGTGAAGACCCTAACCGGCAAGACCGTCACCCTCTATGTCGAGAGCTCC 176 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | |||||| ||||| ||||| || ||||| ||||| |||||| Sbjct 177 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGATCAA 236 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | ||| ||||| ||||| || | ||| | | || ||| || || Sbjct 237 CAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGCAGGACCCTCGCCGACTACAAT 296 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 297 ATCCAGAAGGAGTCGAC 313 >seq167078 Length=762 Score = 87.8 bits (96), Expect = 2e-12 Identities = 106/143 (74%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || || |||||||| ||||| ||||| ||||||||||||| | || ||||| | ||| Sbjct 502 GATAAGGAAGGCATCCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAA 561 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203 |||| ||| | | |||||||| ||||||||||| || || | || | || || Sbjct 562 GATGGTCGAACCCTTGCAGATTATAATATTCAAAAAGAGTCAACTCTCCACCTTGTTTTG 621 Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225 || ||||| ||||| ||||| || Sbjct 622 AGGTTGAGGGGAGGAACTATGAT 644 >seq302619 Length=692 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||| ||| | || ||| | || || ||| Sbjct 330 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 389 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||| || | || || ||||||| || ||||| || || || || || || Sbjct 390 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 449 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||||| || | | || ||||| || || |||| | | | | | ||||| ||| Sbjct 450 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAAC 509 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| || || || ||||||||||| Sbjct 510 ATTCAAAAGGAGTCCACCCTTCATTTAGTG 539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428242675970265