Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq40208 95.1 1e-14
seq104817 93.3 4e-14
seq21874 93.3 4e-14
seq136929 89.7 4e-13
seq167078 87.8 2e-12
seq302619 86.0 5e-12
>seq40208
Length=2036
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| |||| ||||| |||| || |||| |||||| | |
Sbjct 371 ATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACGATCACTCTCGAGGTCGAGAGCTCC 430
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | ||||| ||||| ||||| ||||| || || || |||||
Sbjct 431 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCAGATCAG 490
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| |||| | || ||| ||||| ||||| || | || | | | ||||| |||
Sbjct 491 CAGAGGTTGATCTTCGCCGGAAAGCAGCTCGAGGACGGTAGGACCTTGGCTGATTACAAC 550
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|| || || || || || | ||||| |||
Sbjct 551 ATCCAGAAGGAGTCAACCCTCCATTTGGTG 580
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | || || ||||| |||| ||||| |||| || |||| |||||| | |
Sbjct 143 ATGCAGATCTTCGTGAAAACCCTAACCGGAAAGACGATCACTCTCGAGGTCGAGAGCTCC 202
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | ||||| ||||| ||||| ||||| || |||||||| ||
Sbjct 203 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCTCCCGACCAG 262
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145
||||| || || | || ||| ||||| ||||| ||
Sbjct 263 CAGAGGCTCATCTTCGCCGGAAAGCAGCTCGAGGA 297
>seq104817
Length=483
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/143 (75%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143
||||| |||||||| ||||| ||||| ||||||||||||| | || ||||| | |||
Sbjct 223 GACAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAA 282
Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203
|||| ||| | | |||||||| || |||||||| || || | || | |||||
Sbjct 283 GATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTGTTG 342
Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225
|| ||||| ||||| ||||| ||
Sbjct 343 AGGTTGAGGGGAGGAACTATGAT 365
>seq21874
Length=1446
Score = 93.3 bits (102), Expect = 4e-14
Identities = 107/143 (75%), Gaps = 1/143 (1%)
Strand=Plus/Minus
Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143
|| || |||||||| ||||| |||||||||||| |||||| | ||| |||||| | |||
Sbjct 1399 GATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAA 1340
Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203
|||| |||| | ||||| ||||| ||||| || || || |||| |||| |||
Sbjct 1339 GATGGAAGAACTCTTGCAGATTACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTA 1280
Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225
|| |||| || || ||||| ||
Sbjct 1279 AGGCTGAGGGGTGGAACTATGAT 1257
>seq136929
Length=1332
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| || || |||| || || | | ||| || | |||||| | |
Sbjct 117 ATGCAGATCTTTGTGAAGACCCTAACCGGCAAGACCGTCACCCTCTATGTCGAGAGCTCC 176
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | |||||| ||||| ||||| || ||||| ||||| ||||||
Sbjct 177 GACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGATCAA 236
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
||||| || || | | ||| ||||| ||||| || | ||| | | || ||| || ||
Sbjct 237 CAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGCAGGACCCTCGCCGACTACAAT 296
Query 24171 ATTCAAAAAGAATCTAC 24187
|| || || || || ||
Sbjct 297 ATCCAGAAGGAGTCGAC 313
>seq167078
Length=762
Score = 87.8 bits (96), Expect = 2e-12
Identities = 106/143 (74%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143
|| || |||||||| ||||| ||||| ||||||||||||| | || ||||| | |||
Sbjct 502 GATAAGGAAGGCATCCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAA 561
Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTA 24203
|||| ||| | | |||||||| ||||||||||| || || | || | || ||
Sbjct 562 GATGGTCGAACCCTTGCAGATTATAATATTCAAAAAGAGTCAACTCTCCACCTTGTTTTG 621
Query 24204 AGATTGAGAGGAGG-ACTATAAT 24225
|| ||||| ||||| ||||| ||
Sbjct 622 AGGTTGAGGGGAGGAACTATGAT 644
>seq302619
Length=692
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| || || | ||||| ||| | || ||| | || || |||
Sbjct 330 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 389
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | || || ||||||| || ||||| || || || || || ||
Sbjct 390 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 449
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|||||||| || | | || ||||| || || |||| | | | | | ||||| |||
Sbjct 450 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAAC 509
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
|||||||| || || || |||||||||||
Sbjct 510 ATTCAAAAGGAGTCCACCCTTCATTTAGTG 539
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428242675970265
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |