Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq167078 102 7e-17 seq104817 96.9 3e-15 seq302619 86.0 5e-12 >seq167078 Length=762 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 ||||| |||||| |||| |||||||| ||||| |||| ||| || || || || ||| Sbjct 502 GATAAGGAAGGCATCCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAA 561 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| |||| | || |||||||| |||||||||||||| ||| | || | || ||| Sbjct 562 GATGGTCGAACCCTTGCAGATTATAATATTCAAAAAGAGTCAACTCTCCACCTTGTTTTG 621 Query 115499 AGATTGCGAGGAGGAA 115514 || ||| | ||||||| Sbjct 622 AGGTTGAGGGGAGGAA 637 >seq104817 Length=483 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 || || |||||| |||| |||||||| ||||| |||| ||| || || || || ||| Sbjct 223 GACAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAA 282 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| |||| | || |||||||| || ||||||||||| ||| | || | |||||| Sbjct 283 GATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTGTTG 342 Query 115499 AGATTGCGAGGAGGAA 115514 || ||| | ||||||| Sbjct 343 AGGTTGAGGGGAGGAA 358 >seq302619 Length=692 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| || || ||||| || |||||||| ||| | || ||| Sbjct 330 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 389 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || ||| ||| |||||||| || |||| || || Sbjct 390 GACACCATTG-ACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCA 448 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||||| || | ||| || || || | || |||| | ||| |||| ||||| || Sbjct 449 GCAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAA 508 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||||||| ||||| || | ||| | ||| Sbjct 509 CATTCAAAAGGAGTCCACCCTTCATTTAGTG 539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423668761787560