Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq16442 100 2e-16
seq155405 93.3 3e-14
seq167275 89.7 4e-13
seq136929 87.8 1e-12
seq33539 87.8 1e-12
seq55815 86.0 5e-12
seq302619 84.2 2e-11
seq1583 84.2 2e-11
>seq16442
Length=1968
Score = 100 bits (110), Expect = 2e-16
Identities = 154/218 (71%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || || |||||||| || |||||||||||||| | || | |||||
Sbjct 427 AGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCC 368
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|| | ||||| || || | || || ||||| |||||| || | |||||| |||||
Sbjct 367 TCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCT 308
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || |||||| | | | | |||||| || |||| |||| ||||| |
Sbjct 307 TGGATCTTGGC--CTTCACATTGTCGATGGTGTCGGAGGACTCCACCTCCAACGTGATCG 250
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939
| || || || || ||||| || || |||||||| |||
Sbjct 249 TCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTG 212
>seq155405
Length=1148
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || || || |||| || || |||||||| ||||| ||||||||||| ||
Sbjct 641 CCACCACGGAGTCTGAGAACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCG 700
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| || ||||||| | || ||||| ||| | || |||| ||||||||| ||
Sbjct 701 AGTGTCCGCCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGA 760
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| || |||||| || || | | | | |||||| | ||
Sbjct 761 ATTCCCTCCTTGTCTTGGATCTTTGCT--TTGACATTGTCAATAGTGTCAGAGCTTTCAA 818
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||||||||| || || || || ||||| ||||| ||||||||
Sbjct 819 CCTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 867
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| |||| || || |||||||| ||||||||||| || | ||| | |||||
Sbjct 200 AGAACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCC 259
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
||||| ||||| || ||| | || |||| ||| || || || | ||||| |||||
Sbjct 260 TCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTCC 319
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
|| | | ||| || | | | | || ||| | ||| |||| |||||| ||
Sbjct 320 TGGATCTTCGCCTTGACATTGTCAATTGTATCGGAGCTTTCCACCTCCAGGGTGATTGTC 379
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|| || || ||||| || ||||| |||||||||
Sbjct 380 TTCCCAGTAAGCGTCTTTACAAAGATCTGCATT 412
>seq167275
Length=2206
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767
||| || ||||| | || |||| |||||| || |||||||| ||||||||||| || ||
Sbjct 578 CCCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGC 637
Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827
|| || | | ||||| | || || || ||| | || |||| ||| ||||| ||
Sbjct 638 CAGTGTCCTACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGG 697
Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887
| ||| |||||||| ||| | | ||| || | | | ||||| | |||
Sbjct 698 AATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCAC 757
Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
||||| || || ||||| || |||| || || ||||| || ||||||
Sbjct 758 TTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCATT 806
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || || || |||| || || |||||||| ||||| ||||||||||| ||
Sbjct 1263 CCACCACGGAGTCTAAGCACCAGGTGGAGGGTGGACTCTTTTTGAATGTTGTAGTCAGCA 1322
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | ||||||| | || ||||| ||| | || |||| || ||||| ||
Sbjct 1323 AGTGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGG 1382
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| || ||||| ||| || | | | | |||||| | ||
Sbjct 1383 ATTCCCTCCTTGTCTTGGATCTTTGC--CTTGACATTGTCAATAGTGTCAGAGCTTTCAA 1440
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | |||||| || || || || || ||||| ||||| ||||||||
Sbjct 1441 CCTCGAGGGTGATAGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 1489
>seq136929
Length=1332
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || || || || | || || || |||||||| || || |||||||||||
Sbjct 343 CCACCACGAAGTCTGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGCG 284
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| || ||||||| | || || || ||| | || |||| |||||| || |||
Sbjct 283 AGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGTTGATCTGGAGGG 224
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| |||||| ||||| || || ||| || || | | | | |||||| | |||
Sbjct 223 ATGCCCTCCTTGTCCTGGATCTTGGCT--TTGACGTTGTCGATGGTGTCGGAGCTCTCGA 166
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| | ||||| ||| || ||||| || || || ||||| ||||||||
Sbjct 165 CATAGAGGGTGACGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCAT 117
>seq33539
Length=831
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/206 (70%), Gaps = 4/206 (2%)
Strand=Plus/Plus
Query 16736 AGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTG 16795
|| || |||||||| || |||||||||||||| | || | ||||||| | | |||
Sbjct 3 AGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCCTCGAGCTATTTT 62
Query 16796 CCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTGCT 16853
|| | | |||| || || ||||||| || | |||||| ||||| || || ||
Sbjct 63 CCGACGAAGATAACGCGTTGCTGGTCCAGCGGGATGCCCTCCTTGTCTTGGATCTTGGC- 121
Query 16854 GCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCA 16913
|||||| | | | | |||||| || |||| |||| ||||| || || || || |
Sbjct 122 -CTTCACATTGTCGATGGTGTCGGAGGACTCCACCTCCAACGTGATCGTCTTCCCCGTTA 180
Query 16914 GCGTTTTGACAAAAATCTGCATTTTG 16939
| ||||| || || |||||||| |||
Sbjct 181 GGGTTTTCACGAAGATCTGCATCTTG 206
>seq55815
Length=911
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
||||| |||||||||||||| || || ||||| | | || | | ||||| | ||
Sbjct 336 TGCAGAGTGGACTCCTTTTGAATATTATAGTCAACAAGTGTCCTTCCATCCTCAAGCTGC 277
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTT-- 16850
||||| ||| |||| | || |||||||| || | ||||| ||||| |||||
Sbjct 276 TTGCCTGCAAAAATCAACCTTTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGAATTTTA 217
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
||| ||||| | | | ||||| | ||| |||||| |||||||||| ||||
Sbjct 216 GCT--TTCACATTATCAATGGTGTCAGAGCTTTCCACTTCCACAATGATGGTTTTGCCGG 159
Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935
| || || |||||||| || |||||
Sbjct 158 TAAGGGTCTTGACAAAGATTTGCAT 134
>seq302619
Length=692
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || ||||| | || || | ||| || |||||||||||||| |||||||| || |||
Sbjct 556 CCACCACGTAGACGAAGCACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCC 497
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | ||||| | || || || ||| | || || | ||| ||||| ||
Sbjct 496 AGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 437
Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| |||||||| || || ||||| |||||| | | | | ||||| |||
Sbjct 436 ATACCCTCTTTATCCTGAATCTTTGC--CTTCACGTTGTCAATGGTGTCAGAACTCTCAA 379
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||| |||||||| || || || || || ||||| || |||||
Sbjct 378 CCTCCAAGGTTATGGTTTTCCCAGTGAGAGTCTTCACAAAGATTTGCAT 330
>seq1583
Length=2309
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/214 (69%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| ||||| |||||||||||||| || || ||||| || | || | | |||
Sbjct 345 AGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTGCAAGTGTCCTTCCATCC 286
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | || || || ||| |||| | || ||| ||||| || | ||||| || ||
Sbjct 285 TCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCC 226
Query 16844 GCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
||||| ||| ||||| | | | ||||| | ||| ||||| |||||||
Sbjct 225 TGAATTTTAGCT--TTCACATTATCTATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGG 168
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|||| ||||| || || |||||||| || |||||
Sbjct 167 TTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 134
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 403492541037370
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