Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq16442 100 2e-16 seq155405 93.3 3e-14 seq167275 89.7 4e-13 seq136929 87.8 1e-12 seq33539 87.8 1e-12 seq55815 86.0 5e-12 seq302619 84.2 2e-11 seq1583 84.2 2e-11 >seq16442 Length=1968 Score = 100 bits (110), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || |||||||||||||| | || | ||||| Sbjct 427 AGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCC 368 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||||| || || | || || ||||| |||||| || | |||||| ||||| Sbjct 367 TCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCT 308 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | |||||| || |||| |||| ||||| | Sbjct 307 TGGATCTTGGC--CTTCACATTGTCGATGGTGTCGGAGGACTCCACCTCCAACGTGATCG 250 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTG 16939 | || || || || ||||| || || |||||||| ||| Sbjct 249 TCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTG 212 >seq155405 Length=1148 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || || || |||| || || |||||||| ||||| ||||||||||| || Sbjct 641 CCACCACGGAGTCTGAGAACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCG 700 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||| | || ||||| ||| | || |||| ||||||||| || Sbjct 701 AGTGTCCGCCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGA 760 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || |||||| || || | | | | |||||| | || Sbjct 761 ATTCCCTCCTTGTCTTGGATCTTTGCT--TTGACATTGTCAATAGTGTCAGAGCTTTCAA 818 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||||||||| || || || || ||||| ||||| |||||||| Sbjct 819 CCTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 867 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||| || || |||||||| ||||||||||| || | ||| | ||||| Sbjct 200 AGAACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCC 259 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| ||||| || ||| | || |||| ||| || || || | ||||| ||||| Sbjct 260 TCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTCC 319 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | ||| || | | | | || ||| | ||| |||| |||||| || Sbjct 320 TGGATCTTCGCCTTGACATTGTCAATTGTATCGGAGCTTTCCACCTCCAGGGTGATTGTC 379 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || || || ||||| || ||||| ||||||||| Sbjct 380 TTCCCAGTAAGCGTCTTTACAAAGATCTGCATT 412 >seq167275 Length=2206 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || ||||| | || |||| |||||| || |||||||| ||||||||||| || || Sbjct 578 CCCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGC 637 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || || | | ||||| | || || || ||| | || |||| ||| ||||| || Sbjct 638 CAGTGTCCTACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGG 697 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||| |||||||| ||| | | ||| || | | | ||||| | ||| Sbjct 698 AATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCAC 757 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| || || ||||| || |||| || || ||||| || |||||| Sbjct 758 TTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCATT 806 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || || || |||| || || |||||||| ||||| ||||||||||| || Sbjct 1263 CCACCACGGAGTCTAAGCACCAGGTGGAGGGTGGACTCTTTTTGAATGTTGTAGTCAGCA 1322 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || ||||| ||| | || |||| || ||||| || Sbjct 1323 AGTGTTCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGG 1382 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || ||||| ||| || | | | | |||||| | || Sbjct 1383 ATTCCCTCCTTGTCTTGGATCTTTGC--CTTGACATTGTCAATAGTGTCAGAGCTTTCAA 1440 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || || || || || ||||| ||||| |||||||| Sbjct 1441 CCTCGAGGGTGATAGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 1489 >seq136929 Length=1332 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || || || || | || || || |||||||| || || ||||||||||| Sbjct 343 CCACCACGAAGTCTGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCGGCG 284 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || ||||||| | || || || ||| | || |||| |||||| || ||| Sbjct 283 AGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGTTGATCTGGAGGG 224 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || ||| || || | | | | |||||| | ||| Sbjct 223 ATGCCCTCCTTGTCCTGGATCTTGGCT--TTGACGTTGTCGATGGTGTCGGAGCTCTCGA 166 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | | ||||| ||| || ||||| || || || ||||| |||||||| Sbjct 165 CATAGAGGGTGACGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCAT 117 >seq33539 Length=831 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 16736 AGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGTTTG 16795 || || |||||||| || |||||||||||||| | || | ||||||| | | ||| Sbjct 3 AGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCCTCGAGCTATTTT 62 Query 16796 CCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTTGCT 16853 || | | |||| || || ||||||| || | |||||| ||||| || || || Sbjct 63 CCGACGAAGATAACGCGTTGCTGGTCCAGCGGGATGCCCTCCTTGTCTTGGATCTTGGC- 121 Query 16854 GCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTCA 16913 |||||| | | | | |||||| || |||| |||| ||||| || || || || | Sbjct 122 -CTTCACATTGTCGATGGTGTCGGAGGACTCCACCTCCAACGTGATCGTCTTCCCCGTTA 180 Query 16914 GCGTTTTGACAAAAATCTGCATTTTG 16939 | ||||| || || |||||||| ||| Sbjct 181 GGGTTTTCACGAAGATCTGCATCTTG 206 >seq55815 Length=911 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| |||||||||||||| || || ||||| | | || | | ||||| | || Sbjct 336 TGCAGAGTGGACTCCTTTTGAATATTATAGTCAACAAGTGTCCTTCCATCCTCAAGCTGC 277 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTT-- 16850 ||||| ||| |||| | || |||||||| || | ||||| ||||| ||||| Sbjct 276 TTGCCTGCAAAAATCAACCTTTGTTGGTCTGGGGGAATACCCTCCTTGTCTTGAATTTTA 217 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| ||||| | | | ||||| | ||| |||||| |||||||||| |||| Sbjct 216 GCT--TTCACATTATCAATGGTGTCAGAGCTTTCCACTTCCACAATGATGGTTTTGCCGG 159 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || || |||||||| || ||||| Sbjct 158 TAAGGGTCTTGACAAAGATTTGCAT 134 >seq302619 Length=692 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || || | ||| || |||||||||||||| |||||||| || ||| Sbjct 556 CCACCACGTAGACGAAGCACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCC 497 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || || || ||| | || || | ||| ||||| || Sbjct 496 AGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 437 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||||| || || ||||| |||||| | | | | ||||| ||| Sbjct 436 ATACCCTCTTTATCCTGAATCTTTGC--CTTCACGTTGTCAATGGTGTCAGAACTCTCAA 379 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| |||||||| || || || || || ||||| || ||||| Sbjct 378 CCTCCAAGGTTATGGTTTTCCCAGTGAGAGTCTTCACAAAGATTTGCAT 330 >seq1583 Length=2309 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| |||||||||||||| || || ||||| || | || | | ||| Sbjct 345 AGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTGCAAGTGTCCTTCCATCC 286 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || || || ||| |||| | || ||| ||||| || | ||||| || || Sbjct 285 TCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGGAATACCCTCCTTATCC 226 Query 16844 GCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 ||||| ||| ||||| | | | ||||| | ||| ||||| ||||||| Sbjct 225 TGAATTTTAGCT--TTCACATTATCTATGGTGTCAGAGCTTTCCACTTCCAAAGTGATGG 168 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || || |||||||| || ||||| Sbjct 167 TTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403492541037370