Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq152914 136 3e-27 seq155405 111 1e-19 seq167275 107 1e-18 seq302619 91.5 1e-13 seq73737 86.0 4e-12 seq40208 86.0 4e-12 seq16442 82.4 5e-11 >seq152914 Length=961 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 251 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGTTAGGGACAGTGGGAATCTCGT 310 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 311 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 345 >seq155405 Length=1148 Score = 111 bits (122), Expect = 1e-19 Identities = 165/233 (71%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | || ||| | ||||| |||||||| ||||||||| |||||||||| Sbjct 409 CATT-CCACCACGCAGACGGAGCACCAGGTGAAGAGTAGACTCCTTTTGGATATTGTAAT 467 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | || | || |||| ||||| |||||||| || || | || ||||| | Sbjct 468 CGGCAAGGGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTG 527 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | ||| || |||||| || ||| ||| ||||| | || ||||| ||| | Sbjct 528 GGGGTATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTATCGATTGTATCAGAACTCT 587 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || ||||| || || || || || | || || || || ||||||||| Sbjct 588 CAACCTCCAATGTGATGGTCTTCCCTGTGAGAGTCTTAACAAAGATCTGCATG 640 >seq167275 Length=2206 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||||||| ||||| |||||| || || |||||||| | | Sbjct 579 CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCC 638 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | | || || | || ||||| ||||| || || | || || || | ||| Sbjct 639 AGTGTCCTACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 698 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| ||| || ||| ||||| | | || ||| ||||| ||| Sbjct 699 ATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACT 758 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||||||||| || ||||| || ||||| || || ||||| Sbjct 759 TCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 805 Score = 102 bits (112), Expect = 5e-17 Identities = 163/233 (70%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||| | ||||| || || ||| ||| ||||| |||||||||| Sbjct 1031 CATT-CCACCACGAAGACGGAGCACCAGGTGGAGGGTGGACTCTTTTTGGATATTGTAAT 1089 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | ||| | || |||| ||||| |||||||| || || | || ||||| | Sbjct 1090 CTGCGAGCGTACGGCCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTG 1149 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| ||| || |||||| ||| ||| ||| ||||| | || || || || | Sbjct 1150 GGGGGATGCCCTCCTTGTCCTGAATCTTTGCCTTGACATTATCGATTGTGTCAGAGCTCT 1209 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || ||||| || || || || || | || || || || ||||||||| Sbjct 1210 CAACCTCCAATGTGATGGTCTTCCCTGTGAGAGTCTTGACAAAGATCTGCATG 1262 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 38115 TGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGT 38174 ||||| || ||||||||||||||||||||| | | | || | || || | || Sbjct 375 TGAAGGGTTGACTCCTTTTGAATATTGTAATCTGCTAGAGTCCGGCCATCTTCAAGCTGC 434 Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234 || || |||||||| || | || || || | || | ||| || |||||| ||| ||| Sbjct 435 TTACCAGCAAATATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTT 494 Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294 |||||||| | | ||||| ||| || || || || || || || || || || Sbjct 495 GCTTTCACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAGTG 554 Query 38295 AAGGTTTTCACGAATATCTGCAT 38317 | ||| ||||| || |||||||| Sbjct 555 AGGGTCTTCACAAAGATCTGCAT 577 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | || ||| | ||||| || | || ||||||||||| ||||| | Sbjct 803 CATT-CCACCACGCAGACGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGT 861 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | | | | | | |||| ||||| ||||| || ||||| || || | || ||||| | Sbjct 862 CTGCAAGAGTTCTTCCGTCCTCTAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTG 921 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||| | || || |||||| || ||| || ||||| | | ||||| |||| Sbjct 922 GGGGAATACCCTCCTTGTCCTGGATCTTTGCTTTAACATTGTCAATTGTATCAGAGCTTT 981 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || ||||| || || || || || | ||| ||||| || || ||||| Sbjct 982 CCACCTCCAATGTGATTGTCTTCCCAGTAAGGGTCTTCACAAAGATTTGCAT 1033 >seq302619 Length=692 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||| |||||||| ||| |||||||||||| |||||||||| | Sbjct 556 CCACCACGTAGACGAAGCACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCC 497 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || || ||||| || || | || || || | ||| Sbjct 496 AGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGG 437 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || ||||| ||| ||| ||| |||||| || | | || || ||| ||||| Sbjct 436 ATACCCTCTTTATCCTGAATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCAACC 377 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || || || ||||| || || | || ||||| || || |||||| Sbjct 376 TCCAAGGTTATGGTTTTCCCAGTGAGAGTCTTCACAAAGATTTGCATG 329 >seq73737 Length=4372 Score = 86.0 bits (94), Expect = 4e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| |||| |||||||||||||||||||||||| ||||||| | | | Sbjct 1774 CTCTCTCTTCAAAGTACTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGATATTAC 1833 Query 20007 GGTAATATTTAGCCTTA 20023 | ||||||| |||| Sbjct 1834 CATCGTATTTAGTCTTA 1850 >seq40208 Length=2036 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | | ||| | ||||||||| || || |||||| || || |||||||||| | Sbjct 597 CCACCGCGAAGACGGAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGCC 538 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || | |||| || | || |||||||| || || | | || ||||| | |||| Sbjct 537 AAGGTCCTACCGTCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGG 478 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||| |||||| || || ||| || || | || || || || || || Sbjct 477 ATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACC 418 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | || || || || || || | |||||||||||| |||||||| Sbjct 417 TCGAGAGTGATCGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 371 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG-TCGT 38166 |||||| || || ||| |||||| || ||||||||||| | ||| | | | | || | Sbjct 1036 CACCAAGTGCAGGGTGGACTCCTTCTGGATATTGTAATCCG-CAAGAGTCCTGCCATCCT 978 Query 38167 CTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCA 38226 | ||||| ||||| || || || | | || ||||| | |||| ||||| || ||| Sbjct 977 CCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTATCCT 918 Query 38227 TAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTT 38286 || || ||| || || | | ||||| || ||||| || | ||||| || | Sbjct 917 GGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCAACCTCCAGGGTAATGGTCT 858 Query 38287 TACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || ||||| || ||||||||||||||||| Sbjct 857 TCCCTGTCAAAGTCTTCACGAATATCTGCAT 827 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| || || | ||| | ||||| || ||||| |||||| || || ||||| || | Sbjct 371 TACCGCCCCTGAGACGGAGCACCAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGG 312 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 |||| || |||| || | || |||||||| || || || | || || |||| | Sbjct 311 CCAAAGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGCCTCTGCTGGTCGGGAG 252 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| |||||| || || ||| || || | || || || || || | Sbjct 251 GGATCCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGA 192 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || | || || || || || || | |||||||||||| |||||||| Sbjct 191 CCTCGAGAGTGATCGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCAT 143 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38090 ACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGA 38149 |||||| | | ||| | ||||| ||||| ||| |||||| || ||||||||||||| Sbjct 1282 ACCACCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGGATATTGTAATCAGC 1223 Query 38150 CAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGG 38209 || ||| | || || | || || || ||||| || | | || || || | || Sbjct 1222 CAGGGTACGACCATCCTCGAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGG 1163 Query 38210 GACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAAC 38269 || ||||| || ||| || || || ||||| | || ||||| ||| || || Sbjct 1162 GATACCTTCCTTATCCTGGATCTTGGCTTTGACATTATCGATGGTATCCGAACTCTCCAC 1103 Query 38270 TTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || || || || || ||||| || ||||| || |||||||| Sbjct 1102 CTCCAAAGTGATGGTCTTTCCTGTCAAAGTCTTCACAAAGATCTGCAT 1055 >seq16442 Length=1968 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 ||||| || ||||| |||||| || || ||||| || | | | || |||| || Sbjct 425 CACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCCTC 366 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 | ||||||||||| || || ||||| || || || | |||| ||| || ||||| Sbjct 365 GAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCTTG 306 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 || || ||||||||| | || || || || || || || || || || || Sbjct 305 GATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCCACCTCCAACGTGATCGTCTT 246 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 ||||| | |||||||||||| |||||||| || Sbjct 245 CCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 333627994019453