Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq43933 95.1 1e-14 seq103216 87.8 2e-12 seq109030 82.4 8e-11 >seq43933 Length=2170 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/109 (81%), Gaps = 7/109 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 665 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 608 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTT 126369 |||||||||| || ||||| |||||||| |||||||| ||||| || Sbjct 607 GCGTGGGTTCAAATCCCACTTCTGACAAA-TATTATTGTTTTTTTTTTT 560 >seq103216 Length=749 Score = 87.8 bits (96), Expect = 2e-12 Identities = 79/97 (81%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| || || | | Sbjct 181 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCGAACGAGGG 122 Query 126322 CGTGGGTTCGAACCCCACACCTGACA-AATTATTATT 126357 ||||||||| || ||||| |||||| || | ||||| Sbjct 121 CGTGGGTTCAAATCCCACTTCTGACATAAATTTTATT 85 >seq109030 Length=469 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/105 (79%), Gaps = 10/105 (10%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 136 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 193 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||||||||| || ||||| ||||| ||| || || ||||||| Sbjct 194 CGTGGGTTCAAATCCCACTTCTGAC--ATTTTTTTT--AATTTTT 234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 554611339916120