Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq313002 118 2e-21
seq77563 87.8 4e-12
seq58575 87.8 4e-12
seq29488 87.8 4e-12
seq6291 87.8 4e-12
seq150246 86.0 1e-11
seq74959 86.0 1e-11
seq48700 86.0 1e-11
seq272371 84.2 4e-11
seq249055 84.2 4e-11
>seq313002
Length=899
Score = 118 bits (130), Expect = 2e-21
Identities = 158/220 (72%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 218582 TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACC 218641
|||| ||||| | |||||| || | ||||| || || | | || ||| |||||
Sbjct 286 TGGTTGATGGGTTGAAGCCAGGTCAAAGAAAGATACTATTCTGCTCCTTTAAGAGGAACT 227
Query 218642 TGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACC 218701
| | | ||| || || || ||||||||||||||||| || || ||||| |||||
Sbjct 226 TTATAAAGGAAGCAAAAGTTGCACAGTTTTCTGGTTATGTGTCTGAGCATTCTGCCTACC 167
Query 218702 ATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCA 218761
| || |||||||| ||||| | || | || | || |||||||| || ||||||||||
Sbjct 166 ACCATGGTGAGCAAAGTCTTGCGAGTACTATCATTGGAATGGCACAAGATTATGTGGGCA 107
Query 218762 GTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801
| |||||||| || || || | || || ||||| |||||
Sbjct 106 GCAACAACATCAATTTCCTTCAACCAAATGGTCAATTTGG 67
>seq77563
Length=367
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 139 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 198
Query 142563 CCCCAC 142568
||||||
Sbjct 199 CCCCAC 204
>seq58575
Length=553
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 253 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 312
Query 142563 CCCCAC 142568
||||||
Sbjct 313 CCCCAC 318
>seq29488
Length=302
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 165 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 106
Query 142563 CCCCAC 142568
||||||
Sbjct 105 CCCCAC 100
>seq6291
Length=996
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 197 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 256
Query 142563 CCCCAC 142568
||||||
Sbjct 257 CCCCAC 262
>seq150246
Length=1724
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 272 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 213
Query 142564 CCCAC 142568
|||||
Sbjct 212 CCCAC 208
>seq74959
Length=549
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 157 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 216
Query 142564 CCCAC 142568
|||||
Sbjct 217 CCCAC 221
>seq48700
Length=635
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 143 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 202
Query 142564 CCCAC 142568
|||||
Sbjct 203 CCCAC 207
>seq272371
Length=479
Score = 84.2 bits (92), Expect = 4e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564
|||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||||
Sbjct 1 CCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 60
Query 142565 CCAC 142568
||||
Sbjct 61 CCAC 64
>seq249055
Length=408
Score = 84.2 bits (92), Expect = 4e-11
Identities = 57/64 (89%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564
|||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||||
Sbjct 1 CCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 60
Query 142565 CCAC 142568
||||
Sbjct 61 CCAC 64
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1023581015070083
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |