Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq313002 118 2e-21 seq77563 87.8 4e-12 seq58575 87.8 4e-12 seq29488 87.8 4e-12 seq6291 87.8 4e-12 seq150246 86.0 1e-11 seq74959 86.0 1e-11 seq48700 86.0 1e-11 seq272371 84.2 4e-11 seq249055 84.2 4e-11 >seq313002 Length=899 Score = 118 bits (130), Expect = 2e-21 Identities = 158/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 218582 TGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACC 218641 |||| ||||| | |||||| || | ||||| || || | | || ||| ||||| Sbjct 286 TGGTTGATGGGTTGAAGCCAGGTCAAAGAAAGATACTATTCTGCTCCTTTAAGAGGAACT 227 Query 218642 TGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACC 218701 | | | ||| || || || ||||||||||||||||| || || ||||| ||||| Sbjct 226 TTATAAAGGAAGCAAAAGTTGCACAGTTTTCTGGTTATGTGTCTGAGCATTCTGCCTACC 167 Query 218702 ATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCA 218761 | || |||||||| ||||| | || | || | || |||||||| || |||||||||| Sbjct 166 ACCATGGTGAGCAAAGTCTTGCGAGTACTATCATTGGAATGGCACAAGATTATGTGGGCA 107 Query 218762 GTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 | |||||||| || || || | || || ||||| ||||| Sbjct 106 GCAACAACATCAATTTCCTTCAACCAAATGGTCAATTTGG 67 >seq77563 Length=367 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 139 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 198 Query 142563 CCCCAC 142568 |||||| Sbjct 199 CCCCAC 204 >seq58575 Length=553 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 253 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 312 Query 142563 CCCCAC 142568 |||||| Sbjct 313 CCCCAC 318 >seq29488 Length=302 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 165 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 106 Query 142563 CCCCAC 142568 |||||| Sbjct 105 CCCCAC 100 >seq6291 Length=996 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 197 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 256 Query 142563 CCCCAC 142568 |||||| Sbjct 257 CCCCAC 262 >seq150246 Length=1724 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 272 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 213 Query 142564 CCCAC 142568 ||||| Sbjct 212 CCCAC 208 >seq74959 Length=549 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 157 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 216 Query 142564 CCCAC 142568 ||||| Sbjct 217 CCCAC 221 >seq48700 Length=635 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 143 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 202 Query 142564 CCCAC 142568 ||||| Sbjct 203 CCCAC 207 >seq272371 Length=479 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||| Sbjct 1 CCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 60 Query 142565 CCAC 142568 |||| Sbjct 61 CCAC 64 >seq249055 Length=408 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 142505 CCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCC 142564 |||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||| Sbjct 1 CCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCC 60 Query 142565 CCAC 142568 |||| Sbjct 61 CCAC 64 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1023581015070083