Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq302619 89.7 4e-13 seq1583 87.8 1e-12 seq55815 84.2 2e-11 seq155405 82.4 5e-11 >seq302619 Length=692 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || |||||||| ||| |||| || | Sbjct 330 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 389 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| ||| ||| |||||||||||| | || | |||| Sbjct 390 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 449 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||||||||| || || || || ||| || |||| |||||||| Sbjct 450 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAAC 509 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||| ||||| || || |||||| | || | ||| |||| || || Sbjct 510 ATTCAAAAGGAGTCCACCCTTCATTTAGTGCTTCGTCTACGTGGTGG 556 >seq1583 Length=2309 Score = 87.8 bits (96), Expect = 1e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 21930 AAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT 21989 || ||||| | ||| | |||| ||||| || || ||||| || ||||| ||||| ||| Sbjct 2 AAGGAGGGCATTCCTCCAGACCAGCAGAGGCTCATTTTTGCAGGGAAACAGCTAGAGGAT 61 Query 21990 TTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGT 22049 | ||| | || || |||||||||||||||||||| |||||||| |||| || ||| Sbjct 62 GGTCACACTCTTGCGGACTACAATATTCAGAAGGAATCAACTCTTCACTTGGTGTTGCGT 121 Query 22050 TTACGAGGAGG 22060 | || || || Sbjct 122 CTCCGTGGTGG 132 >seq55815 Length=911 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 21930 AAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGAT 21989 || ||||| | ||| | |||| ||||| || || ||||| || ||||| ||||| ||| Sbjct 2 AAGGAGGGCATTCCTCCAGACCAGCAGAGGCTCATTTTTGCAGGGAAACAGCTAGAGGAT 61 Query 21990 TTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGT 22049 | ||| | || |||||||| || ||||||||||| |||||||| |||| || ||| Sbjct 62 GGTCACACTCTTGCAGATTACAACATCCAGAAGGAATCAACTCTTCACTTGGTGTTGCGT 121 Query 22050 TTACGAGGAGG 22060 | || || || Sbjct 122 CTTCGTGGTGG 132 >seq155405 Length=1148 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || ||||| |||| | | || ||||| || |||||||| |||||||| ||||| Sbjct 546 GACAAGGAGGGCATACCCCCAGATCAGCAGAGGCTCATCTTTGCCGGCAAACAGCTAGAG 487 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| || | |||||||||||||| || ||||| ||||||||||| |||| | Sbjct 486 GATGGCCGCACCCTTGCCGATTACAATATCCAAAAGGAGTCTACTCTTCACCTGGTGCTC 427 Query 22047 CGTTTACGAGGAGGA 22061 ||| | || || ||| Sbjct 426 CGTCTGCGTGGTGGA 412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356714307904702