Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq302619 111 1e-19 seq167275 107 2e-18 seq155405 104 2e-17 seq37689 100 2e-16 seq20182 98.7 8e-16 seq23575 82.4 6e-11 >seq302619 Length=692 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | |||||||| | || || || ||||||||||||||||| Sbjct 559 ATGCCACCACGTAGACGAAGCACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCA 500 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| ||||| || || ||||| ||||||| | ||| ||||| || Sbjct 499 GCCAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGT 440 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || ||||| || ||||||| || | | |||| |||||| | || Sbjct 439 GGGATACCCTCTTTATCCTGAATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCA 380 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | ||||| || || ||||| || ||||| || |||||| Sbjct 379 ACCTCCAAGGTTATGGTTTTCCCAGTGAGAGTCTTCACAAAGATTTGCATG 329 >seq167275 Length=2206 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 || || || |||||||| |||||||| ||| | ||| || ||||||||| || ||||| Sbjct 381 GTTGACTCCTTTTGAATATTGTAATCTGCT-AGAGTCCGGCCATCTTCAAGCTGCTTACC 439 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| | ||||| | ||| ||||||||||||||||| || ||||| ||||||| ||| Sbjct 440 AGCAAATATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCTTT 499 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | |||| || || | || || |||| ||| | || || || || || || Sbjct 500 CACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAGTGAGGGT 559 Query 114365 TTTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 560 CTTCACAAAGATCTGCAT 577 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || |||||||| | | || ||||| | || || || || || ||||||||||| Sbjct 576 ATCCCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCT 635 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | | ||| ||||| || || || || ||||||| | ||| ||||| || Sbjct 636 GCCAGTGTCCTACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGG 695 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||||||||||||||| |||||| || | | |||| ||||| | | ||| Sbjct 696 GGAATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCC 755 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| || |||| ||| || ||||| || ||||| Sbjct 756 ACTTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 805 >seq155405 Length=1148 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| ||||| | ||| || || | || || |||||||| |||||||| || Sbjct 638 ATGCCACCACGGAGTCTGAGAACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTAGTCA 697 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || ||||| || || ||||| |||| || | ||||||||||| Sbjct 698 GCGAGTGTCCGCCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGG 757 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| |||||| ||| | | |||| ||||| | | ||| Sbjct 758 GGAATTCCCTCCTTGTCTTGGATCTTTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCA 817 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| || || ||||| ||||| |||||||| Sbjct 818 ACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 867 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| |||| | ||| || || | || ||||| |||||||||||||| || Sbjct 182 ATTCCACCACGCAGTCGGAGAACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCT 241 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| | || || | |||||||| || ||||||| | ||| || || || Sbjct 242 GCAAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGG 301 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| || || ||||| ||||| || | | |||| || |||| | ||| Sbjct 302 GGAATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATTGTATCGGAGCTTTCC 361 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || || || || |||||||| |||||||| Sbjct 362 ACCTCCAGGGTGATTGTCTTCCCAGTAAGCGTCTTTACAAAGATCTGCAT 411 >seq37689 Length=540 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || || ||||| | ||| | || | || ||||| |||||||| ||||| || Sbjct 146 ATACCACCGCGGAGTCTGAGAACCAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCA 205 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | ||| ||||| || |||||||| | || || | ||||||||||| Sbjct 206 ACAAGGGTGTGTCCATCCTCAAGCTGCTTACCAGCAAAAATCAGCCTTTGTTGGTCCGGG 265 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| |||||| || || ||| | | |||| |||||| | | ||| Sbjct 266 GGGATGCCTTCCTTGTCGTGGATTTTGGCTTTGACATTATCAATGGTGTCAGAGCTTTCA 325 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| || ||||| || || || |||||||| Sbjct 326 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 375 >seq20182 Length=796 Score = 98.7 bits (108), Expect = 8e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 ||||| ||||| || | | || ||||| | ||||| || || || || ||||| || Sbjct 371 ATACCACCACGGAGACGAAGCACCAAATGGAGGGTAGACTCCTTCTGGATATTGTAGTCT 430 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| | || || ||| ||||| || || || || ||||||| | ||| ||||| || Sbjct 431 GCT-AGGGTGCGGCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGG 489 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 ||||||||||| ||||| |||||| || | | |||| |||||| | | || Sbjct 490 GGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTC 549 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| || | ||| | || || || |||| ||| || ||||| |||||||| Sbjct 550 GACCTCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 600 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||| | || || || || || ||||||||||| Sbjct 599 ATACCACCACGCAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCA 658 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || ||| ||||| || || ||||| |||| |||||||| |||||||| Sbjct 659 GCAAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGG 718 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTT 114298 ||||| || || ||||| |||||| Sbjct 719 GGAATTCCCTCCTTGTCCTGAATCTT 744 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||| | || ||||| || || ||||||||||| Sbjct 143 ATACCACCACGGAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCT 202 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| ||||| || || || || |||| || | ||| ||||| || Sbjct 203 GCCAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGT 262 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| |||||| || | | |||| |||||| | || || Sbjct 263 GGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCC 322 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || || || |||| || || || || |||||||| Sbjct 323 ACCTCAAGGGTGATGGTCTTTCCTGTCAAGGTCTTGACGAAGATCTGCAT 372 >seq23575 Length=1941 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/230 (68%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | | ||| | || | ||||| || || || || || |||||| Sbjct 1847 ACCACCACGGAGACGAAGAACAAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGC 1788 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||||| ||| || | || || || ||| |||| | | || || ||||| || Sbjct 1787 CAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGCGG 1728 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATTCGA 114333 || || || || || || | || | ||| | | |||| ||| |||| | || | Sbjct 1727 GATACCCTCCTTATCTTGAAACCTTGGCTTTGACATTGTCAATGGTATCGGAGCTCTCCA 1668 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 | |||| ||| | || ||||| |||| ||| || ||||||||||||||| Sbjct 1667 CCTCCAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCATG 1618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418479680052756