Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq302619 111 1e-19
seq167275 107 2e-18
seq155405 104 2e-17
seq37689 100 2e-16
seq20182 98.7 8e-16
seq23575 82.4 6e-11
>seq302619
Length=692
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || |||||||| | | |||||||| | || || || |||||||||||||||||
Sbjct 559 ATGCCACCACGTAGACGAAGCACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCA 500
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || ||| ||||| || || ||||| ||||||| | ||| ||||| ||
Sbjct 499 GCCAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGT 440
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || ||||| || ||||||| || | | |||| |||||| | ||
Sbjct 439 GGGATACCCTCTTTATCCTGAATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCA 380
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| |||| ||| | ||||| || || ||||| || ||||| || ||||||
Sbjct 379 ACCTCCAAGGTTATGGTTTTCCCAGTGAGAGTCTTCACAAAGATTTGCATG 329
>seq167275
Length=2206
Score = 107 bits (118), Expect = 2e-18
Identities = 144/198 (73%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATC-GCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244
|| || || |||||||| |||||||| ||| | ||| || ||||||||| || |||||
Sbjct 381 GTTGACTCCTTTTGAATATTGTAATCTGCT-AGAGTCCGGCCATCTTCAAGCTGCTTACC 439
Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304
||| | ||||| | ||| ||||||||||||||||| || ||||| ||||||| |||
Sbjct 440 AGCAAATATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCCTGAATCTTTGCTTT 499
Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364
| | |||| || || | || || |||| ||| | || || || || || ||
Sbjct 500 CACATTATCAATTGTATCAGAACTCTCTACCTCCAAGGTTATGGTCTTTCCAGTGAGGGT 559
Query 114365 TTTTACAAAAATCTGCAT 114382
|| ||||| ||||||||
Sbjct 560 CTTCACAAAGATCTGCAT 577
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || |||||||| | | || ||||| | || || || || || |||||||||||
Sbjct 576 ATCCCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCT 635
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || | | ||| ||||| || || || || ||||||| | ||| ||||| ||
Sbjct 636 GCCAGTGTCCTACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGG 695
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||||||||||||||| |||||| || | | |||| ||||| | | |||
Sbjct 696 GGAATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCC 755
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| || | ||||| || |||| ||| || ||||| || |||||
Sbjct 756 ACTTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 805
>seq155405
Length=1148
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| ||||| | ||| || || | || || |||||||| |||||||| ||
Sbjct 638 ATGCCACCACGGAGTCTGAGAACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTAGTCA 697
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || || || ||||| || || ||||| |||| || | |||||||||||
Sbjct 698 GCGAGTGTCCGCCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGG 757
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || || ||||| |||||| ||| | | |||| ||||| | | |||
Sbjct 758 GGAATTCCCTCCTTGTCTTGGATCTTTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCA 817
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | || ||||| || || ||||| ||||| ||||||||
Sbjct 818 ACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 867
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| |||| | ||| || || | || ||||| |||||||||||||| ||
Sbjct 182 ATTCCACCACGCAGTCGGAGAACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCT 241
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| | || || | |||||||| || ||||||| | ||| || || ||
Sbjct 242 GCAAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGG 301
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || || ||||| ||||| || | | |||| || |||| | |||
Sbjct 302 GGAATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTGTCAATTGTATCGGAGCTTTCC 361
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| |||| ||| | || || || || || || |||||||| ||||||||
Sbjct 362 ACCTCCAGGGTGATTGTCTTCCCAGTAAGCGTCTTTACAAAGATCTGCAT 411
>seq37689
Length=540
Score = 100 bits (110), Expect = 2e-16
Identities = 160/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || ||||| | ||| | || | || ||||| |||||||| ||||| ||
Sbjct 146 ATACCACCGCGGAGTCTGAGAACCAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCA 205
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| || | ||| ||||| || |||||||| | || || | |||||||||||
Sbjct 206 ACAAGGGTGTGTCCATCCTCAAGCTGCTTACCAGCAAAAATCAGCCTTTGTTGGTCCGGG 265
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| |||||||| |||||| || || ||| | | |||| |||||| | | |||
Sbjct 266 GGGATGCCTTCCTTGTCGTGGATTTTGGCTTTGACATTATCAATGGTGTCAGAGCTTTCA 325
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | || ||||| || ||||| || || || ||||||||
Sbjct 326 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 375
>seq20182
Length=796
Score = 98.7 bits (108), Expect = 8e-16
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211
||||| ||||| || | | || ||||| | ||||| || || || || ||||| ||
Sbjct 371 ATACCACCACGGAGACGAAGCACCAAATGGAGGGTAGACTCCTTCTGGATATTGTAGTCT 430
Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271
||| | || || ||| ||||| || || || || ||||||| | ||| ||||| ||
Sbjct 431 GCT-AGGGTGCGGCCATCCTCAAGCTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCTGG 489
Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331
||||||||||| ||||| |||||| || | | |||| |||||| | | ||
Sbjct 490 GGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCAGAGCTCTC 549
Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||| || | ||| | || || || |||| ||| || ||||| ||||||||
Sbjct 550 GACCTCAAGGGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAGATCTGCAT 600
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || ||||| | || || || || || |||||||||||
Sbjct 599 ATACCACCACGCAGACGAAGCACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCA 658
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
| ||| || ||| ||||| || || ||||| |||| |||||||| ||||||||
Sbjct 659 GCAAGAGTTCGGCCATCCTCAAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGG 718
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTT 114298
||||| || || ||||| ||||||
Sbjct 719 GGAATTCCCTCCTTGTCCTGAATCTT 744
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || ||||| | || ||||| || || |||||||||||
Sbjct 143 ATACCACCACGGAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCT 202
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || ||| ||||| || || || || |||| || | ||| ||||| ||
Sbjct 203 GCCAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGT 262
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || || || ||||| |||||| || | | |||| |||||| | || ||
Sbjct 263 GGGATACCCTCCTTGTCCTGAATCTTGGCCTTGACATTGTCAATGGTGTCAGAAGACTCC 322
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | || || || |||| || || || || ||||||||
Sbjct 323 ACCTCAAGGGTGATGGTCTTTCCTGTCAAGGTCTTGACGAAGATCTGCAT 372
>seq23575
Length=1941
Score = 82.4 bits (90), Expect = 6e-11
Identities = 157/230 (68%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| || | | ||| | || | ||||| || || || || || ||||||
Sbjct 1847 ACCACCACGGAGACGAAGAACAAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGC 1788
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| ||||||| ||| || | || || || ||| |||| | | || || ||||| ||
Sbjct 1787 CAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGCGG 1728
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGT-TCAACGGTGTCGGTGGATTCGA 114333
|| || || || || || | || | ||| | | |||| ||| |||| | || |
Sbjct 1727 GATACCCTCCTTATCTTGAAACCTTGGCTTTGACATTGTCAATGGTATCGGAGCTCTCCA 1668
Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
| |||| ||| | || ||||| |||| ||| || |||||||||||||||
Sbjct 1667 CCTCCAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCATG 1618
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 418479680052756
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