Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq16442 120 3e-22 seq40208 105 7e-18 seq302619 100 3e-16 seq33539 96.9 3e-15 seq23575 91.5 1e-13 seq155405 89.7 5e-13 seq294161 86.0 6e-12 seq163152 86.0 6e-12 seq167275 84.2 2e-11 >seq16442 Length=1968 Score = 120 bits (132), Expect = 3e-22 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || ||||||||| ||||| |||| Sbjct 409 GACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCCTCGAGCTGTTTTCCGGCG 350 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || ||||| |||||||| || || || || ||||| ||| || || | | Sbjct 349 AAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACA 290 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 |||| | | |||||||| ||||||||||| | ||| | ||| || || || || ||||| Sbjct 289 TTGT-CGATGGTGTCGGAGGACTCCACCTCCAACGTGATCGTCTTCCCCGTTAGGGTTTT 231 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 230 CACGAAGATCTGCAT 216 >seq40208 Length=2036 Score = 105 bits (116), Expect = 7e-18 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||| || ||| || ||||||||| || || |||| Sbjct 338 TTGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTCCGGCCGTCCTCGAGCTGCTTTCCGG 279 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| || | ||| ||||| ||||| || ||||| ||||| ||| || || | Sbjct 278 CGAAGATGAGCCTCTGCTGGTCGGGAGGGATCCCTTCCTTGTCCTGGATCTTGGCCTTGA 219 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | |||||||| ||| ||||||| || | ||| || || || || |||| Sbjct 218 CGTTGTCGATGGTGTCGGAGCTCTCGACCTCGAGAGTGATCGTCTTTCCGGTTAGGGTTT 159 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 158 TCACGAAGATCTGCAT 143 >seq302619 Length=692 Score = 100 bits (110), Expect = 3e-16 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | |||||||| | | | |||||||||||||||||||| || Sbjct 557 GCCACCACGTAGACGAAGCACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGC 498 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||| || || || || | | |||| || | ||| ||||| || || Sbjct 497 CAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGG 438 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCC 138564 ||||| ||||| || ||| | |||| || | ||| || | |||||| | ||| Sbjct 437 GATACCCTCTTTATC-CTGAATCTTTGCCTTCACGTTG-TCAATGGTGTCAGAACTCTCA 380 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| | || | ||||| ||||| ||||| || ||||| || |||||| Sbjct 379 ACCTCCAAGGTTATGGTTTTCCCAGTGAGAGTCTTCACAAAGATTTGCATG 329 >seq33539 Length=831 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | ||| || ||||||||| | ||| ||| Sbjct 9 GACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCCTCGAGCTATTTTCCGACG 68 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| | || || |||||| | || || || || ||||| ||| || || | | Sbjct 69 AAGATAACGCGTTGCTGGTCCAGCGGGATGCCCTCCTTGTCTTGGATCTTGGCCTTCACA 128 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||||| ||||||||||| | ||| | ||| || || || || ||||| Sbjct 129 TTG-TCGATGGTGTCGGAGGACTCCACCTCCAACGTGATCGTCTTCCCCGTTAGGGTTTT 187 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 188 CACGAAGATCTGCAT 202 >seq23575 Length=1941 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || |||||||| | || || ||||||||| || || |||| | Sbjct 1584 GACTCCTTCTGGATATTGTAGTCAGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCA 1525 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | |||||| || ||||| || || || ||||| ||| || ||| | Sbjct 1524 AAGATGAGCCTCTGTTGATCTGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACG 1465 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||||||||||| || | || || || || || || || Sbjct 1464 TTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGACGGTCTTGCCGGTAAGCGTCTTC 1405 Query 138601 ACAAAAATCTGCATG 138615 ||||| ||||||||| Sbjct 1404 ACAAAGATCTGCATG 1390 >seq155405 Length=1148 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| || | ||| || || | | |||| |||||||||||||||||||| Sbjct 185 CCACCACGCAGTCGGAGAACCAAGTGCAAGGTTGATTCCTTTTGAATGTTGTAGTCTGCA 244 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | |||||| | |||||||| | | |||| || | ||| || || || || Sbjct 245 AGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGA 304 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | |||| || | || |||| ||||| Sbjct 305 ATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTG-TCAATTGTATCGGAGCTTTCCAC 363 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| || || |||||||| |||||||| Sbjct 364 CTCCAGGGTGATTGTCTTCCCAGTAAGCGTCTTTACAAAGATCTGCAT 411 >seq294161 Length=603 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | |||||||| || |||||||| || | Sbjct 234 CCACCCCGGAGACGGAGGACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAATCAGCC 175 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| |||||||| || || || | | |||| | | ||| ||||||||||| Sbjct 174 AGGGTACGACCATCCTCGAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGAGGG 115 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||| ||||| ||| || || | | || | ||| || | ||| ||| Sbjct 114 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTATCAGAGCTCTCGACC 55 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | ||| || || || || ||||| || || |||||||| Sbjct 54 TCGAGAGTGATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 8 >seq163152 Length=1956 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | ||| | || || || | | | |||||||| ||||||||||| || | Sbjct 1267 CCGCCACGGAGACGGAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 1326 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||| || || |||| | |||| | | || |||||||| || Sbjct 1327 AGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATCAACCTTTGCTGGTCCGGTGGG 1386 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || || || ||| || ||| | | || | ||| || | ||| ||| Sbjct 1387 ATCCCCTCCTTATCCTGGATCTTGGCTTTGACATTATCAATGGTATCCGAGCTCTCAACC 1446 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || |||| ||| || |||||||||||||| Sbjct 1447 TCCAAAGTGATGGTCTTGCCTGTCAAAGTCTTCACAAAAATCTGCAT 1493 >seq167275 Length=2206 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| ||| | ||| || || | |||| |||||||||||||||||||| Sbjct 807 CCACCACGCAGACGGAGAACCAAGTGCAATGTTGATTCCTTTTGAATGTTGTAGTCTGCA 866 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | |||||| | |||||||| | | |||| || | ||| || || || || Sbjct 867 AGAGTTCTTCCGTCCTCTAACTGTTTACCTGCAAAGATGAGCCTCTGCTGATCTGGGGGA 926 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| ||| ||| | |||| || | || || | ||||| Sbjct 927 ATACCCTCCTTGTCCTGGATCTTTGCTTTAACATTG-TCAATTGTATCAGAGCTTTCCAC 985 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || || ||||| || || || ||||| || ||||| Sbjct 986 CTCCAATGTGATTGTCTTCCCAGTAAGGGTCTTCACAAAGATTTGCAT 1033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494257729425360