Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq163152 116 3e-21 seq23575 111 1e-19 seq136929 107 2e-18 seq302619 105 6e-18 seq1583 100 3e-16 seq55815 95.1 1e-14 seq16442 91.5 1e-13 seq294161 89.7 5e-13 seq167275 89.7 5e-13 seq167078 87.8 2e-12 seq104817 87.8 2e-12 seq21874 84.2 2e-11 seq37689 82.4 7e-11 >seq163152 Length=1956 Score = 116 bits (128), Expect = 3e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || ||||| | ||| | |||||| || || ||||| |||||||| ||||| Sbjct 1492 ATCCCACCACGAAGCCTGAGCACCAAATGCAGAGTCGACTCCTTCTGGATATTGTAATCC 1551 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| |||||||| || || ||| | ||||| | ||||| ||||| Sbjct 1552 GCAAGAGTCCTGCCATCCTCCAATTGCTTACCAGCGAAAATCAACCTCTGCTGATCCGGT 1611 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| ||||| || || || |||| || | || | |||||||| ||| Sbjct 1612 GGGATCCCTTCCTTATCCTGGATCTTGGCCTTGA-CGTTATCAATCGTGTCGGAGCTCTC 1670 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||||||| | || || ||||| ||||| || || || |||||||| Sbjct 1671 AACTTCGAGAGTGATTGTCTTCCCGGTGAGAGTCTTCACGAAGATTTGCAT 1721 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| | ||| || || || ||||| |||||||| |||||| Sbjct 1720 ATACCACCGCGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCG 1779 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| ||||| || || || ||| | ||||| | ||||||||||| Sbjct 1780 GCCAAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGG 1839 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || || || || |||| || | || | ||| || || ||| Sbjct 1840 GGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTATCAGAGCTCTC 1898 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| |||||||| | ||| || |||||||| ||||| || || || ||||| Sbjct 1899 GACCTCGAGAGTGATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 1949 >seq23575 Length=1941 Score = 111 bits (122), Expect = 1e-19 Identities = 162/228 (71%), Gaps = 1/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || ||||| || || ||||| ||||||||||||||| Sbjct 1846 CCACCACGGAGACGAAGAACAAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGCC 1787 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| ||||| || ||||| ||| | ||||| | |||||| |||||||| Sbjct 1786 AAAGTACGACCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGCGGG 1727 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTG-TTTGATCGCTTCTACGGTGTCGGAAGACTCGAC 45292 || || || |||||||||| || | ||||| || | ||| ||||| ||| || Sbjct 1726 ATACCCTCCTTATCTTGAAACCTTGGCTTTGACATTGTCAATGGTATCGGAGCTCTCCAC 1667 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || ||||| || | ||| || |||||||| ||||| Sbjct 1666 CTCCAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCAT 1619 >seq136929 Length=1332 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || ||||| || || ||||| ||||||||||||||| Sbjct 571 CCACCACGGAGACGAAGAACAAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGCC 512 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| ||||| || ||||| ||| | ||||| | |||||| |||||||| Sbjct 511 AAAGTACGACCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGCGGG 452 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || || || |||||||||| || ||||| || | ||| || || ||| || Sbjct 451 ATACCCTCCTTATCTTGAACCTTGGCTTTGACATTGTCAATGGTATCAGAGCTCTCCACC 392 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | || ||||| || | ||| || |||||||| ||||| Sbjct 391 TCCAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCAT 345 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || || | ||| || || || || || ||||| |||||||| || ||| Sbjct 346 ATGCCACCACGAAGTCTGAGCACGAGGTGGAGAGTCGACTCCTTCTGGATATTGTAGTCG 287 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | || || | || ||||| || | || | | || || || || Sbjct 286 GCGAGGGTCCTGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGTTGATCTGGA 227 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || ||||| || | || | ||||||||| ||| Sbjct 226 GGGATGCCCTCCTTGTCCTGGATCTTGGCTTTGA-CGTTGTCGATGGTGTCGGAGCTCTC 168 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| | ||| || || || ||||||||||| || || ||||| || ||||| Sbjct 167 GACATAGAGGGTGACGGTCTTGCCGGTTAGGGTCTTCACAAAGATCTGCAT 117 >seq302619 Length=692 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| || | ||| || || || || ||||||||||| ||||| || || Sbjct 331 ATGCCACCGCGGAGTCTGAGCACCAGGTGTAGAGTCGATTCCTTTTGAATATTGTAGTCA 272 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || ||||| || | |||| || ||||||||| || Sbjct 271 GCAAGGGTGCGTCCATCCTCGAGCTGCTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGG 212 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| |||||||| ||||| ||||| || | |||||| || || Sbjct 211 GGAATGCCTTCCTTATCTTGGATTTTGGCTTTGACATTGTCGATGGTGTCAGAGCTTTCA 152 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || ||||| || ||||| || || || || |||||| Sbjct 151 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACGAAGATCTGCATC 101 >seq1583 Length=2309 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| | ||||| || || |||||||| |||||||| || Sbjct 363 ATACCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCT 304 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || || ||||| | ||||| | |||||||| || Sbjct 303 GCAAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGG 244 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || ||||| |||||||| ||| | |||| |||||| || || Sbjct 243 GGAATACCCTCCTTATCCTGAATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCC 184 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | ||||||||||| || || || ||||| |||||||| Sbjct 183 ACTTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 134 >seq55815 Length=911 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||||| ||||| || || |||||||| |||||||| || Sbjct 363 ATACCACCGCGCAGACGAAGCACTAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCA 304 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| || | || || ||||| | ||||| | ||| ||||| || Sbjct 303 ACAAGTGTCCTTCCATCCTCAAGCTGCTTGCCTGCAAAAATCAACCTTTGTTGGTCTGGG 244 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || || || ||||||||||| ||| | || | |||||| || || Sbjct 243 GGAATACCCTCCTTGTCTTGAATTTTAGCTTTCACATTATCAATGGTGTCAGAGCTTTCC 184 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | | | | ||||||||||| || || || ||||| |||||||| Sbjct 183 ACTTCCACAATGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 134 >seq16442 Length=1968 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | ||| || || || || || ||||| ||||| || || ||| | Sbjct 442 CCACCGCGGAGGCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCG 383 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | |||||||| ||| | || | || |||||||||||||| Sbjct 382 AGAGTCCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGG 323 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || ||||| || || || | || | ||||||||| ||||| || Sbjct 322 ATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCCACC 263 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || | || | ||| || || ||||| ||||| || || || |||||| Sbjct 262 TCCAACGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATC 215 >seq294161 Length=603 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || | ||||| || || ||||| ||||| || ||||| Sbjct 234 CCACCCCGGAGACGGAGGACCAAATGCAAAGTCGACTCCTTCTGGATGTTGTAATCAGCC 175 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| | ||| || | || || ||||| | ||||| | ||||||||||| || Sbjct 174 AGGGTACGACCATCCTCGAGCTGCTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGAGGG 115 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || ||||| || || || || || |||| || | || | ||| || || |||||| Sbjct 114 ATACCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTATCAGAGCTCTCGAC 56 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | ||| || |||||||| ||||| || || || ||||| Sbjct 55 CTCGAGAGTGATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 8 >seq167275 Length=2206 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTT--TAGAATCG 45188 ||| | |||||| ||||| ||||| || || || ||||| || | || | || ||| Sbjct 596 CACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATC--TGCCAGTGTCCTACCATCC 653 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || | || |||||||| | || | | |||||||| || |||||||||||||| || Sbjct 654 TCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCC 713 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 ||||| || |||| || | ||||| || || ||||| | ||||| ||| Sbjct 714 TGAATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTTCCACTTCCAAAGTAATAGTT 773 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || | ||| || ||||| |||||||| Sbjct 774 TTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 805 >seq167078 Length=762 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | | |||||| || || || || ||||| || ||||| ||||||||||| Sbjct 637 TTCCTCCCCTCAACCTCAAAACAAGGTGGAGAGTTGACTCTTTTTGAATATTATAATCTG 578 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | |||| | ||| ||||| || || || || | |||| || ||||| ||||| | Sbjct 577 CAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCCGGAG 518 Query 45232 GAATGCCTTCTTTATCTTGAA 45252 | |||||||| ||||| |||| Sbjct 517 GGATGCCTTCCTTATCCTGAA 497 >seq104817 Length=483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 ||||||| | | ||||||||| || || || ||||| || ||||||||||||||||| Sbjct 358 TTCCTCCCCTCAACCTCAACACAAGGTGGAGAGTTGACTCTTTTTGGATATTATAATCTG 299 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | |||| | ||| ||||| || || || || | |||| || ||||| || || | Sbjct 298 CAAGGGTTCGACCATCTTCCAACTGCTTACCAGCAAAAATCAGTCTCTGCTGATCTGGAG 239 Query 45232 GAATGCCTTCTTTATCTTGAA 45252 | |||||||| || || |||| Sbjct 238 GGATGCCTTCCTTGTCCTGAA 218 >seq21874 Length=1446 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45112 TTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGC 45171 |||| || | ||||| || ||||| || || ||||| ||||||||||| || ||||| Sbjct 1264 TTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCTG 1323 Query 45172 TGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCG 45231 | ||| | ||| |||||||| || || || | ||||||| || || || || | Sbjct 1324 CAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCAGGAG 1383 Query 45232 GAATGCCTTCTTTATCTTGAA 45252 | |||||||| ||||| |||| Sbjct 1384 GGATGCCTTCCTTATCCTGAA 1404 >seq37689 Length=540 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| || | || || || || || ||||||||||| ||||| || || Sbjct 146 ATACCACCGCGGAGTCTGAGAACCAGGTGAAGAGTCGATTCCTTTTGAATATTGTAGTCA 205 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | ||| || | || || || || | |||| | ||| |||||||| Sbjct 206 ACAAGGGTGTGTCCATCCTCAAGCTGCTTACCAGCAAAAATCAGCCTTTGTTGGTCCGGG 265 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || |||||||| || || || ||||| ||||| || | |||||| || || Sbjct 266 GGGATGCCTTCCTTGTCGTGGATTTTGGCTTTGACATTATCAATGGTGTCAGAGCTTTCA 325 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| || ||||| || || || || ||||| Sbjct 326 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATCTGCAT 375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450177316123480