Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq167275 100 2e-16
seq163152 89.7 4e-13
seq155405 82.4 5e-11
>seq167275
Length=2206
Score = 100 bits (110), Expect = 2e-16
Identities = 162/232 (70%), Gaps = 1/232 (0%)
Strand=Plus/Plus
Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547
|||| || || || | ||| || |||||||||| ||| || || ||||| || ||||
Sbjct 575 CATC-CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAAT 633
Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607
| |||| | |||| || | || || || |||| || | | |||||| || |
Sbjct 634 CTGCCAGTGTCCTACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTG 693
Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667
||| | |||||||||||| || || || | | | | |||||||| |||||
Sbjct 694 GGGGAATGCCTTCTTTGTCCTGAATCTTCGCCTTGACATTATCAATTGTGTCTGAGCTTT 753
Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|||| ||||||||||| ||||| || || ||||| || || ||||| |||||
Sbjct 754 CCACTTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 805
>seq163152
Length=1956
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || || | ||| || |||||||| | ||| || || || ||||| |||||||||
Sbjct 1723 CCACCGCGAAGACGGAGCACCAAATGGAGGGTGGACTCCTTCTGGATATTGTAATCGGCC 1782
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
||| || |||| ||||| || || ||| | || || || | |||||| |||| |||
Sbjct 1783 AAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAAGATCAACCTCTGCTGGTCCGGGGGA 1842
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671
| || || ||||| || || || | ||| | | | || || | ||| || ||
Sbjct 1843 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTATCAGAGCTCTCGAC 1901
Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| | ||| || || || || |||| ||||| ||||||||||||||
Sbjct 1902 CTCGAGAGTGATCGTCTTCCCGGTTAGGGTTTTGACGAAGATCTGCAT 1949
>seq155405
Length=1148
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| || |||| ||| || |||| || | ||| || ||||| ||||| ||||||||
Sbjct 413 CCACCACGCAGACGGAGCACCAGGTGAAGAGTAGACTCCTTTTGGATATTGTAATCGGCA 472
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| ||| |||| || | ||||| ||| |||| || | | ||||||||| | ||||
Sbjct 473 AGGGTGCGGCCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGT 532
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| ||| || ||||| || ||| || | | | | ||| || | || || ||
Sbjct 533 ATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTATCGATTGTATCAGAACTCTCAACC 592
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
||||| || || || || || || | ||| || || ||||||||||||
Sbjct 593 TCCAATGTGATGGTCTTCCCTGTGAGAGTCTTAACAAAGATCTGCATG 640
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 346001467787579
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |