Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq322356 125 9e-24 >seq322356 Length=2453 Score = 125 bits (138), Expect = 9e-24 Identities = 311/465 (67%), Gaps = 18/465 (4%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TC 15973 ||| || ||||| | | || ||||| || | |||| ||||| || |||| || Sbjct 625 ATCGAGAATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGT---GTTACCCTC 681 Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 |||||||||||| |||||||||||||| |||| || ||||| | ||||||||| || Sbjct 682 AAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCT-- 739 Query 16034 CATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGAT 16090 |||| |||| | | ||| ||| || |||||||| ||||||| || || || Sbjct 740 -CCACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAAT 798 Query 16091 GCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 ||| ||| ||||| ||| |||| ||| ||||| || || || || || ||| Sbjct 799 GCAAGGTGCGTTTTCCTTAGC--CTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACA 856 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTC 16207 ||||||||||| || ||||| | | | | | || | || || || ||| || ||| Sbjct 857 CCAACAAACATTTCAACAAACTCAGAACCTG-AGATAGAGAAAAAAGGAACACCAGCTTC 915 Query 16208 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGC 16267 ||| ||||| || || || |||||||| || || ||||| || | || || | Sbjct 916 ACCAGCAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGGAGGGCCAACAAGAAGAAC 975 Query 16268 ACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 ||| ||||| || ||| || | |||||||||| | ||| | || ||||| Sbjct 976 CCCTTTAGGAATGCGAGCTCCAACAGCAGTGAATCTCTCAGGCTTCTTTAAGAACTCCAC 1035 Query 16328 AATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 | || | || || | ||||| | || | ||| ||||||| Sbjct 1036 CACTTCCACAAAATCCTGCTTGGCTTCATCCACCCCAGCAACATC 1080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618234887797360