Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq322356 111 2e-19
>seq322356
Length=2453
Score = 111 bits (122), Expect = 2e-19
Identities = 229/337 (68%), Gaps = 8/337 (2%)
Strand=Plus/Plus
Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283
||| || ||||| | | || || || || | |||| ||||| || | | |||||
Sbjct 625 ATCGAGAATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGTGTTACCCTCAAA 684
Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343
||||||||| ||||||||||| || |||| || ||||| | ||||||||| ||
Sbjct 685 ACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCT---CC 741
Query 9344 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400
|||| |||| | | ||| ||| || |||||||| ||||||| || ||||| ||
Sbjct 742 ACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 801
Query 9401 TGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAAC 9460
||| ||||| || | | ||| ||||| || || | || || ||||||||
Sbjct 802 AGGTGCGTTTTCCTTAGCCTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACCAAC 861
Query 9461 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 9519
|||||| || ||||| | | | | | || | || || || ||| || |||||| |
Sbjct 862 AAACATTTCAACAAACTCAGAACCTG-AGATAGAGAAAAAAGGAACACCAGCTTCACCAG 920
Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
|||| || || || |||||||| || || |||||
Sbjct 921 CAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGG 957
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 587597550434120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |