Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq171303 118 1e-21 >seq171303 Length=2772 Score = 118 bits (130), Expect = 1e-21 Identities = 175/246 (71%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 153732 GGTGAGTGGGGATTTGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGA 153791 ||||||| ||| ||||||| || ||| ||| ||||||||| | || ||||| Sbjct 952 GGTGAGTTGGGGGCAGATATTGTGGTGGGTTCCGCGCAGAGGTTTGGTGTGCCGATGGGG 1011 Query 153792 TATGGAGGTCCTCATGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCT 153851 ||||||||||||||||| |||||| | || ||| | | |||| ||||| | ||| ||| Sbjct 1012 TATGGAGGTCCTCATGCAGCATTCCTGGCCACATCTCAGGAGTACAAGAGGATGATGCCT 1071 Query 153852 GGCAGAATTGTAG--GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCAC 153909 || |||||| | | || ||| || ||| | || || ||| | | || Sbjct 1072 GGAAGAATTATTGGTGTAAGT--GTTGATTCTTCGGGGAAGCCTGCACTGCGTATGGCCA 1129 Query 153910 TACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTC 153969 | ||||| || ||||| |||||||| || ||||| || ||||| ||||| ||||| |||| Sbjct 1130 TGCAGACAAGGGAGCAACATATCAGAAGGGACAAGGCTACCAGCAACATTTGCACTGCTC 1189 Query 153970 AGGCAC 153975 ||| || Sbjct 1190 AGGTAC 1195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576873048173920