Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq171303 100 3e-16 seq312628 98.7 1e-15 >seq171303 Length=2772 Score = 100 bits (110), Expect = 3e-16 Identities = 147/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 158442 GCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAAC 158501 ||| ||||||||| | || ||||| || |||||||||||||| |||||| | || ||| | Sbjct 987 GCAGAGGTTTGGTGTGCCGATGGGGTATGGAGGTCCTCATGCAGCATTCCTGGCCACATC 1046 Query 158502 AGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAA 158559 | |||| ||||| | ||| ||||| |||||| | | || ||| || ||| Sbjct 1047 TCAGGAGTACAAGAGGATGATGCCTGGAAGAATTATTGGTGTAAGT--GTTGATTCTTCG 1104 Query 158560 GGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAA 158619 || || ||| | | || | ||||| || ||||| ||||||||||| ||||| Sbjct 1105 GGGAAGCCTGCACTGCGTATGGCCATGCAGACAAGGGAGCAACATATCAGAAGGGACAAG 1164 Query 158620 GCAACCAGTAACATCTGCACAGCACA 158645 || ||||| ||||| ||||| || || Sbjct 1165 GCTACCAGCAACATTTGCACTGCTCA 1190 >seq312628 Length=888 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 159663 ACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACA 159722 |||||| ||||| ||| ||| || ||| || ||||| || ||||| ||| | || Sbjct 527 ACAGGTGGGTCTGACAAGCCCAGGTTGGATTGGAGCTGATGTCTGCCATCTCAACCTCCA 586 Query 159723 TAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 ||||||||| || |||||||| ||||| || ||||||||| | |||||||||||||| Sbjct 587 TAAGACATTTTGCATTCCACACGGAGGCGGTGGTCCTGGCATGGGTCCTATTGGTGT 643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 585675745125680