Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq155405 95.1 1e-14 seq21874 84.2 2e-11 seq167275 82.4 6e-11 seq167078 82.4 6e-11 seq32342 82.4 6e-11 >seq155405 Length=1148 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || |||||||| || | || || || || || ||| || |||| || Sbjct 412 AATGCAGATCTTTGTAAAGACGCTTACTGGGAAGACAATCACCCTGGAGGTGGAAAGCTC 353 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || ||||| || ||| ||||| ||||| | ||| |||||| Sbjct 352 CGATACAATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 293 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||| ||||| || | |||| | || || || || Sbjct 292 GCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTACAA 233 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||| ||||| || ||||| |||| Sbjct 232 CATTCAAAAGGAATCAACCTTGCACTTGGT 203 >seq21874 Length=1446 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 |||||||||||| | || ||||| || || |||||||||||| | |||| | || ||| Sbjct 1378 GATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAAGATGGAAGAACTCTTGCAGAT 1319 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 || ||||| ||||| || || ||||| ||| | || ||||| Sbjct 1318 TACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTAAG 1278 >seq167275 Length=2206 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || | || || || || || || || |||| || Sbjct 1034 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACATTGGAGGTGGAAAGCTC 975 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || ||| ||| ||||| ||||| | ||| |||||| Sbjct 974 TGATACAATTGACAATGTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 915 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || |||||||| || ||||| || || || | |||| | || || || || Sbjct 914 GCAGAGGCTCATCTTTGCAGGTAAACAGTTAGAGGACGGAAGAACTCTTGCAGACTACAA 855 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||||||| ||||| || ||||| |||| Sbjct 854 CATTCAAAAGGAATCAACATTGCACTTGGT 825 >seq167078 Length=762 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727 ||||| |||||||| || ||||| || || || ||||||||| | ||| | || ||| Sbjct 523 GATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAAGATGGTCGAACCCTTGCAGAT 582 Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 ||||| ||||||||||| || ||||| ||| | || || || || | ||||| Sbjct 583 TATAATATTCAAAAAGAGTCAACTCTCCACCTTGTTTTGAGGTTGAGGGGAGG 635 >seq32342 Length=717 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 28666 TAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCG 28725 ||||||| ||||| || |||||||| || ||||| ||||| ||| | |||| | || | Sbjct 371 TAGATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGATGGAAGAACTCTTGCAG 312 Query 28726 ATTATAACATTCAAAAAGAATCTACTCTGCACATG 28760 |||| ||||||||||| ||||| || ||||| || Sbjct 311 ATTACAACATTCAAAAGGAATCGACATTGCACTTG 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423729322323777