Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq155405 95.1 1e-14
seq21874 84.2 2e-11
seq167275 82.4 6e-11
seq167078 82.4 6e-11
seq32342 82.4 6e-11
>seq155405
Length=1148
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
|||||| || |||||||| || | || || || || || ||| || |||| ||
Sbjct 412 AATGCAGATCTTTGTAAAGACGCTTACTGGGAAGACAATCACCCTGGAGGTGGAAAGCTC 353
Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| || | | | || ||||| || ||| ||||| ||||| | ||| ||||||
Sbjct 352 CGATACAATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 293
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
||||| || |||||||| || ||||| ||||| || | |||| | || || || ||
Sbjct 292 GCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGACTACAA 233
Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762
||||||||| ||||| || ||||| ||||
Sbjct 232 CATTCAAAAGGAATCAACCTTGCACTTGGT 203
>seq21874
Length=1446
Score = 84.2 bits (92), Expect = 2e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727
|||||||||||| | || ||||| || || |||||||||||| | |||| | || |||
Sbjct 1378 GATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAAGATGGAAGAACTCTTGCAGAT 1319
Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768
|| ||||| ||||| || || ||||| ||| | || |||||
Sbjct 1318 TACAACATCCAAAAGGAGTCAACTCTTCACCTAGTTTTAAG 1278
>seq167275
Length=2206
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
||||||||| ||||| || || | || || || || || || || |||| ||
Sbjct 1034 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACATTGGAGGTGGAAAGCTC 975
Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| || | | | || | || ||| ||| ||||| ||||| | ||| ||||||
Sbjct 974 TGATACAATTGACAATGTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCA 915
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
||||| || |||||||| || ||||| || || || | |||| | || || || ||
Sbjct 914 GCAGAGGCTCATCTTTGCAGGTAAACAGTTAGAGGACGGAAGAACTCTTGCAGACTACAA 855
Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762
||||||||| ||||| || ||||| ||||
Sbjct 854 CATTCAAAAGGAATCAACATTGCACTTGGT 825
>seq167078
Length=762
Score = 82.4 bits (90), Expect = 6e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 28668 GATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 28727
||||| |||||||| || ||||| || || || ||||||||| | ||| | || |||
Sbjct 523 GATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAAGATGGTCGAACCCTTGCAGAT 582
Query 28728 TATAACATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780
||||| ||||||||||| || ||||| ||| | || || || || | |||||
Sbjct 583 TATAATATTCAAAAAGAGTCAACTCTCCACCTTGTTTTGAGGTTGAGGGGAGG 635
>seq32342
Length=717
Score = 82.4 bits (90), Expect = 6e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 28666 TAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCG 28725
||||||| ||||| || |||||||| || ||||| ||||| ||| | |||| | || |
Sbjct 371 TAGATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGATGGAAGAACTCTTGCAG 312
Query 28726 ATTATAACATTCAAAAAGAATCTACTCTGCACATG 28760
|||| ||||||||||| ||||| || ||||| ||
Sbjct 311 ATTACAACATTCAAAAGGAATCGACATTGCACTTG 277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 423729322323777
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |