Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq171303 113 5e-20 seq312628 95.1 1e-14 >seq171303 Length=2772 Score = 113 bits (124), Expect = 5e-20 Identities = 173/243 (71%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || ||||| ||||| ||||| || ||||| ||||| ||||| ||||| || || || Sbjct 1190 TGAGCAGTGCAAATGTTGCTGGTAGCCTTGTCCCTTCTGATATGTTGCTCCCTTGTCTGC 1131 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTG--TC--CACTGACTGACCTACAATTCT 139432 | || | | |||||| || || || | || |||| || ||| | |||||| Sbjct 1130 ATGGCCATACGCAGTGCAGGCTTCCC--CGAAGAATCAACACTTAC--ACCAATAATTCT 1075 Query 139433 GCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCC 139492 ||||| ||| | ||||| |||| | | ||| || | |||||| |||||||||||||| Sbjct 1074 TCCAGGCATCATCCTCTTGTACTCCTGAGATGTGGCCAGGAATGCTGCATGAGGACCTCC 1015 Query 139493 GTATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATCAAATCCCCACTC 139552 || ||||| || | ||||||||| ||| ||| || ||||||| ||| |||| Sbjct 1014 ATACCCCATCGGCACACCAAACCTCTGCGCGGAACCCACCACAATATCTGCCCCCAACTC 955 Query 139553 ACC 139555 ||| Sbjct 954 ACC 952 >seq312628 Length=888 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 138183 ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGT 138242 |||||||||||||| | ||||||||| || ||||| |||||||| || ||||||||||| Sbjct 643 ACACCAATAGGACCCATGCCAGGACCACCGCCTCCGTGTGGAATGCAAAATGTCTTATGG 584 Query 138243 AAATTTAGATGACATACATCTGCACCATAGTCACATGGTTTTGCTAGACCTACCTGT 138299 | || ||||| || ||||| || ||| || ||| ||| ||||| |||||| Sbjct 583 AGGTTGAGATGGCAGACATCAGCTCCAATCCAACCTGGGCTTGTCAGACCCACCTGT 527 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 138294 ACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATC 138353 ||||||||||| | || || ||||| | ||||| ||||| ||||||||||||| ||| Sbjct 311 ACCTGTGCATTCATGTTAGCTCCATCCATGTATACTTGACCTCCATTGTCATGAATTATC 252 Query 138354 TTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGT 138406 ||||| |||| || | |||| | || |||||||| ||||||||||| Sbjct 251 TTACAGATCTCATCAATACCTTCTTCATACACTCCATGAGTTGATGGATATGT 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576659514250760