Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq322356 91.5 2e-13 >seq322356 Length=2453 Score = 91.5 bits (100), Expect = 2e-13 Identities = 225/339 (66%), Gaps = 12/339 (4%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 ||||| || |||||||| || || || || || || |||||| | ||| || || Sbjct 957 CCAGGAACTGGAAAGACTCTGCTAGCGAAGGCAATTGCTGGTGAAGCTGGTGTTCCTTTT 898 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | | | ||||| || |||||||||||||| ||||| | || Sbjct 897 TTCTCTATCTCAGGTTCTGAGTTTGTTGAAATGTTTGTTGGTGTTGGTGCTTCTCGAGTC 838 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 || ||||| ||| | | || ||||| ||| || ||||| || ||||||| ||| Sbjct 837 CGTGATCTTTTTAAGAAGGCTAAGGAAAACGCACCTTGCATTGTATTTGTTGATGAAATT 778 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGAGAGAA 175551 ||||| || || ||| | | |||| |||| || ||||| || |||||| Sbjct 777 GATGCTGTTGGACGTCAAAGAGGAACTGGAATTGGT---GGAGGCAATGATGAAAGAGAA 721 Query 175552 CAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGG---CATT 175608 || || ||||||| || | || || |||||||| ||||| | | ||||| |||| Sbjct 720 CAGACCCTTAATCAGCTTTTGACAGAAATGGATGGTTTTGAGGGTAACACTGGTATCATT 661 Query 175609 GTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 |||| |||| || ||||| | | ||||| || ||| Sbjct 660 GTGG---TTGCAGCAACTAACAGGGCAGATATTCTCGAT 625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 594159734729440