Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq1583 104 3e-17 seq167275 100 4e-16 seq21874 98.7 1e-15 seq302619 95.1 2e-14 seq20182 91.5 2e-13 seq104817 86.0 9e-12 >seq1583 Length=2309 Score = 104 bits (114), Expect = 3e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || || ||||| || || || ||||| ||| ||| Sbjct 134 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 193 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || |||||| |||||| || ||||| || || || || ||||| || Sbjct 194 GACACCATAGATAATGTGAAAGCTAAAATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 253 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| ||||||||||| || ||| || || | |||| |||||| Sbjct 254 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAAT 313 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTG 156032 || || ||| ||| | || || || || ||| Sbjct 314 AT-TCAAAAGGAGTCCACTCTGCACTTGGTG 343 >seq167275 Length=2206 Score = 100 bits (110), Expect = 4e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | |||||||| || || || || || || || |||| Sbjct 577 ATGCAGATCTTTGTGAAGACCCTCACTGGAAAGACCATAACCTTGGAGGTAGAGAGTTCT 518 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || |||||| || || || || || || ||||| ||||| || || Sbjct 517 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGCATTCCTCCGGACCAG 458 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| ||||||||||| |||||| | | ||| || ||||||| ||| Sbjct 457 CAGAGGCTCATATTTGCTGGTAAGCAGCTTGAAGATGGCCGGACTCTAGCAGATTACAAT 398 Query 156003 ATATCCAAA-GAGGCGACGCTTCA 156025 || || ||| ||| | || ||||| Sbjct 397 AT-TCAAAAGGAGTCAACCCTTCA 375 Score = 96.9 bits (106), Expect = 5e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||| || ||||||||||| || ||||| ||| || Sbjct 806 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 747 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || || || || || || ||||||||||| || ||||| || Sbjct 746 AGACACAATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 687 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | || | ||| || |||||||| || ||| || || | ||||||| || Sbjct 686 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGATGGTAGGACACTGGCAGATTACAA 627 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 ||| || ||| | || || ||||| ||| Sbjct 626 CATACAGAAGGAGTCAACTCTGCATTTGGTG 596 >seq21874 Length=1446 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/127 (78%), Gaps = 4/127 (3%) Strand=Plus/Minus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || ||||| |||||||| ||||| || ||||| |||||||||| |||||||||||| | Sbjct 1402 CAGGATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTG 1343 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAA--GAGGCGACGCTTCATTTAG 156030 |||||| |||||| | ||||||| | | ||||||| ||| | || ||||| ||| Sbjct 1342 GAAGATGGAAGAACTCTTGCAGATTACA--ACATCCAAAAGGAGTCAACTCTTCACCTAG 1285 Query 156031 TGTTAAG 156037 | ||||| Sbjct 1284 TTTTAAG 1278 >seq302619 Length=692 Score = 95.1 bits (104), Expect = 2e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | ||||| ||||| || || || || || || |||| Sbjct 330 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 389 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| || || || |||||||| || || || ||||| || Sbjct 390 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 449 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||| || |||||||| || ||| | | || | | ||||| || Sbjct 450 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAAC 509 Query 156003 ATATCCAAAG-AGGCGACGCTTCATTTAGTG 156032 || || |||| || | || |||||||||||| Sbjct 510 AT-TCAAAAGGAGTCCACCCTTCATTTAGTG 539 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || |||| || | ||||| || || || || | || || ||| ||| Sbjct 102 ATGCAGATCTTCGTTAAGACTCTCACTGGCAAGACCATCACCCTTGAGGTTGAAAGCTCT 161 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || ||| ||||| |||||||| |||||||| || ||||| || Sbjct 162 GACACCATCGACAATGTCAAAGCCAAAATCCAAGATAAGGAAGGCATTCCCCCAGACCAG 221 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 |||||| |||||| ||| || ||||||||||| ||| Sbjct 222 CAAAGACTGATTTTTGCTGGAAAGCAGCTCGAGGAT 257 >seq20182 Length=796 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||||||||| || || || | || ||||| ||| Sbjct 600 ATGCAGATCTTTGTCAAGACTTTGACTGGAAAGACCATCACCCTTGAGGTCGAGAGCTCT 541 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||| || || || || |||||||| || ||||| || Sbjct 540 GACACCATTGACAACGTCAAGGCTAAGATTCAGGACAAGGAAGGCATTCCCCCAGACCAG 481 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | |||||| |||||||| || ||| | | || || |||| || ||| Sbjct 480 CAGAGGCTCATCTTTGCCGGGAAGCAGCTTGAGGATGGCCGCACCCTAGCAGACTACAAT 421 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | || || ||||| ||| Sbjct 420 ATCCAGAAGGAGTCTACCCTCCATTTGGTG 391 >seq104817 Length=483 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 155913 CAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTC 155972 || || || |||||||| |||||||| || || ||| |||||| ||| ||||||||| | Sbjct 220 CAGGACAAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTG 279 Query 155973 GAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 |||||| |||| | ||||||||||||| |||||| | || || || | ||| Sbjct 280 GAAGATGGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTG 339 Query 156033 TTAAGATTAAGAGGCGG 156049 || || || || || || Sbjct 340 TTGAGGTTGAGGGGAGG 356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 728915575610800