Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq21874 96.9 7e-15
seq136929 91.5 3e-13
seq40208 91.5 3e-13
seq23575 86.0 1e-11
>seq21874
Length=1446
Score = 96.9 bits (106), Expect = 7e-15
Identities = 107/143 (75%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 192304 ATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAA 192363
||| | ||||| || || | ||| |||| || | ||| | ||| || ||| || |||
Sbjct 1260 ATAGTTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGTAA 1319
Query 192364 TCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCA 192423
|| | | |||| | |||| |||||||| ||||| ||||| || |||||||||||||||
Sbjct 1320 TCTGCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGATCA 1379
Query 192424 GGTGGTATTCCTTCTTTATCTTG 192446
|| || || ||||| ||||| ||
Sbjct 1380 GGAGGGATGCCTTCCTTATCCTG 1402
>seq136929
Length=1332
Score = 91.5 bits (100), Expect = 3e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||||| | || | || | |||| ||| || |||||||||||| |
Sbjct 572 ACCACCACGGAGACGAAGAACAAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGC 513
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| || || |||| ||||| || || || || ||||| || || || ||||| || ||
Sbjct 512 CAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGCGG 453
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|| || || |||||||| | || ||| ||||| || | ||| || || ||
Sbjct 452 GATACCCTCCTTATCTTGAACCTTGGCTTTGACATTGTCAATGGTATCAGAGCTCTCCAC 393
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || ||||| || ||||| || || || | ||| ||||||||
Sbjct 392 CTCCAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCAT 345
>seq40208
Length=2036
Score = 91.5 bits (100), Expect = 3e-13
Identities = 130/183 (71%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
|||||| ||||| | | || | |||| |||||||| || ||||| ||||| || ||
Sbjct 1009 GATATTGTAATCCGCAAGAGTCCTGCCATCCTCCAATTGCTTTCCAGCGAAGATCAACCT 950
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| ||||| ||||| || ||||| ||||| || || || || || ||| || |
Sbjct 949 CTGCTGATCCGGTGGGATCCCTTCCTTATCCTGGATCTTGGCCTTGACGTTATCAATTGT 890
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||| || || || || || |||||||| || || || || || || | ||||||||
Sbjct 889 ATCGGAGCTCTCAACCTCCAGGGTAATGGTCTTCCCTGTCAAAGTCTTCACGAATATCTG 830
Query 192534 CAT 192536
|||
Sbjct 829 CAT 827
>seq23575
Length=1941
Score = 86.0 bits (94), Expect = 1e-11
Identities = 157/229 (69%), Gaps = 1/229 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | ||||| | || | || | |||| ||| || |||||||||||| |
Sbjct 1847 ACCACCACGGAGACGAAGAACAAGGTGCAGGGTAGACTCCTTCTGGATATTATAATCGGC 1788
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| || || |||| ||||| || || || || ||||| || || || ||||| || ||
Sbjct 1787 CAAAGTACGACCATCCTCCAACTGCTTTCCGGCGAAGATCAACCTTTGCTGATCCGGCGG 1728
Query 192429 TATTCCTTCTTTATCTTG-TATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
|| || || |||||||| | || ||| ||||| || | ||| || || |
Sbjct 1727 GATACCCTCCTTATCTTGAAACCTTGGCTTTGACATTGTCAATGGTATCGGAGCTCTCCA 1668
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
| || || || ||||| || ||||| || || || | ||| ||||||||
Sbjct 1667 CCTCCAGGGTGATGGTCTTGCCAGTCAAAGTCTTCACAAAAATCTGCAT 1619
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 980403735025050
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |