Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq21874 95.1 2e-14 seq302619 87.8 3e-12 seq40208 86.0 1e-11 seq37689 84.2 4e-11 >seq21874 Length=1446 Score = 95.1 bits (104), Expect = 2e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894 ||||| | ||||| || || | ||| |||| || | ||| | ||| || || || | Sbjct 1258 TCATAGTTCCACCCCTCAGCCTTAAAACTAGGTGAAGAGTTGACTCCTTTTGGATGTTGT 1317 Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954 |||||| | || || | | || |||||||| ||||| |||||||| ||||||||||| | Sbjct 1318 AATCTGCAAGAGTTCTTCCATCTTCCAATTGCTTACCGGCAAAAATCAATCTCTGTTGAT 1377 Query 171955 CAGGTGGTATTCCTTCTTTATCTTG 171979 |||| || || ||||| ||||| || Sbjct 1378 CAGGAGGGATGCCTTCCTTATCCTG 1402 >seq302619 Length=692 Score = 87.8 bits (96), Expect = 3e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || || ||||||||||| | ||| || ||||| || || || ||||| |||||||| ||| Sbjct 247 TGCTTTCCAGCAAAAATCAGTCTTTGCTGGTCTGGGGGAATGCCTTCCTTATCTTGGATT 188 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| ||||| || || || || ||| || || || || ||||| || ||| Sbjct 187 TTGGCTTTGACATTGTCGATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTGCCA 128 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || |||| ||| |||||||| Sbjct 127 GTGAGAGTCTTAACGAAGATCTGCAT 102 >seq40208 Length=2036 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171915 TCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTA 171974 || |||||||| || ||||| || || || ||||| || || ||||| || ||||| ||| Sbjct 981 TCCTCCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGTGGGATCCCTTCCTTA 922 Query 171975 TCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATG 172034 || || || || || || ||| || ||||| || || || || || |||||| Sbjct 921 TCCTGGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCAACCTCCAGGGTAATG 862 Query 172035 GTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || || || || | |||||||||||| Sbjct 861 GTCTTCCCTGTCAAAGTCTTCACGAATATCTGCAT 827 >seq37689 Length=540 Score = 84.2 bits (92), Expect = 4e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 || |||||||||||||| | || |||||||| || || || ||||| || || || ||| Sbjct 230 TGCTTACCAGCAAAAATCAGCCTTTGTTGGTCCGGGGGGATGCCTTCCTTGTCGTGGATT 289 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||| |||||| || || || || ||| || || || || ||||| || ||| Sbjct 290 TTGGCTTTGACATTATCAATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTGCCA 349 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 || | || || | ||| |||||||| Sbjct 350 GTGAGAGTCTTGACGAAGATCTGCAT 375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 901479669185400