Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq322356 125 2e-23
seq27794 125 2e-23
seq6145 125 2e-23
seq314856 105 2e-17
>seq322356
Length=2453
Score = 125 bits (138), Expect = 2e-23
Identities = 314/471 (67%), Gaps = 16/471 (3%)
Strand=Plus/Plus
Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948
||||| || ||||| |||||||| | |||| ||| | | || ||| ||||||
Sbjct 632 ATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGTGTTACCCTCAAAACCATCC 691
Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008
|| ||| |||| |||||||| || ||||| ||||||||||| |||| ||
Sbjct 692 ATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTG---CCTC------CA 742
Query 289009 CCCGAATC--GCTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064
|| | || | |||| ||| ||||||||||||||||| |||| || | | ||
Sbjct 743 CCA-ATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 801
Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124
|| | |||| | || | ||| | || | || || || || |||| ||||||
Sbjct 802 AGGTGCGTTTTCCTTAGCCTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACCAAC 861
Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTG 289183
| ||||||| ||||| |||||| | || | | || | || | ||| ||||| || |
Sbjct 862 AAACATTTCAACAAACTCAGAACCTGAGA-TAGAGAAAAAAGGAACACCAGCTTCACCAG 920
Query 289184 CTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCT 289243
| | |||| |||| || || ||||| || ||||| || || || | | ||||| || |
Sbjct 921 CAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGGAGGGCCAACAAGAAGAACCCCTT 980
Query 289244 TTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTT 289303
| || | || ||| ||| | || ||||||| ||||||| || || || | ||
Sbjct 981 TAGGAATGCGAGCTCCAACAGCAGTGAATCTCTCAGGCTTCTTTAAGAACTCCACCACTT 1040
Query 289304 CCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354
|| ||| || | || || ||||| || || |||||| |||| ||||
Sbjct 1041 CCACAAAATCCTGCTTGGCTTCATCCACCCCAGCAACATCATCAAATGTAA 1091
>seq27794
Length=2292
Score = 125 bits (138), Expect = 2e-23
Identities = 234/341 (69%), Gaps = 2/341 (1%)
Strand=Plus/Minus
Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597
|||||| || ||| |||||| | |||||| || |||||| ||| | | | |
Sbjct 2088 ATTTCTCACAGTCCCATCATATTTGACCATAATATCCTCCATAGCCTTCACCAGTCTCCT 2029
Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657
||| ||||||||||| |||||| || || || ||||| || ||||| | | ||| ||
Sbjct 2028 CTGGATATAACCAGTCTCAGATGTCTTGACTGCAGTATCTATAAGACCTTCCCTACCTCC 1969
Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717
||||||||| || || | ||| | || ||| || || | || |||| || ||
Sbjct 1968 CATAGCATGAAAAAAGAACTCCTGTGGAGTTAGTCCTTGAAGGTATGAATTCTCTACAAA 1909
Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCAT 302776
||||| || || || |||| ||| || || ||||||| || | || | | |
Sbjct 1908 GCCACGACTTTCAGGTCCATAGTCGTCCTTAGTGAAATGTGGCAAAGTGCGGTCTATGA- 1850
Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836
|||| ||||| || || || || ||||| ||||||||||| | || | | ||||||| |
Sbjct 1849 AGCCATATGGAATTCGTTTACCCTCAACATTCTGCTGTCCAACACAAGCAGTCATCTGTG 1790
Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877
| ||||| | | ||| ||||| || || || | ||||||
Sbjct 1789 ATATATTGATAAAACTTCCCTTCGATCCGGCTGTAACCATA 1749
>seq6145
Length=3537
Score = 125 bits (138), Expect = 2e-23
Identities = 234/341 (69%), Gaps = 2/341 (1%)
Strand=Plus/Plus
Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597
|||||| || ||| ||||| | |||||| || |||||| ||| | | | |
Sbjct 3087 ATTTCTCACAGTCCCGTCATATTTGACCATAATATCCTCCATAGCCTTCACCAGTCTCCT 3146
Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657
||| ||||| ||||| |||||| || || || ||||| || ||||| | | ||| ||
Sbjct 3147 CTGGATATACCCAGTCTCAGATGTCTTGACTGCAGTATCTATAAGACCTTCCCTACCTCC 3206
Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717
||||||||| ||||| | ||| | || ||| |||| || | || | || || ||
Sbjct 3207 CATAGCATGAAAGAAGAACTCCTGTGGAGTTAGTCCCCGAAGGTATGAATTTTCTACAAA 3266
Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCAT 302776
||||| || || || |||| ||| || ||||| |||| || | || | | |
Sbjct 3267 GCCACGACTTTCTGGTCCATAGTCGTCCTTAGTGAAGTGGGGCAAAGTACGGTCTATGA- 3325
Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836
| || |||||||| || || || ||||| ||||||||||||| || | | ||||||| |
Sbjct 3326 ACCCATATGGGATTCGTTTACCCTCAACATTCTGCTGTCCCACACAAGCAGTCATCTGTG 3385
Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877
| || || | | ||| ||||| || || || | ||||||
Sbjct 3386 ATATGTTGATAAAACTTCCCTTAGATCCGGCTGTAACCATA 3426
Score = 95.1 bits (104), Expect = 4e-14
Identities = 79/97 (81%), Gaps = 0/97 (0%)
Strand=Plus/Plus
Query 301864 ACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGT 301923
||||||||| ||||||| ||||| ||||| | ||||| | |||||||||||| ||||
Sbjct 2392 ACACCAGCATAGTGGAATGTATTGAGAGTCATCTGAGTGGCAGGCTCACCAATAGATTGT 2451
Query 301924 GCCGCAATCATACCAACCATTTCTCCTGGTGCTACAA 301960
|| |||| ||||||| |||||| || |||| |||||
Sbjct 2452 GCAGCAACAATACCAATCATTTCCCCAGGTGATACAA 2488
>seq314856
Length=966
Score = 105 bits (116), Expect = 2e-17
Identities = 158/224 (71%), Gaps = 3/224 (1%)
Strand=Plus/Plus
Query 156045 AAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACA 156101
||| |||| ||||| ||||| ||| ||||| ||||| || ||||| | ||| || ||
Sbjct 54 AAAGTACCTTTCCTTTTGCCTCCCCCCTGATCAACATAACGGGCAGTATCATTAAAAACT 113
Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161
| ||||||||||| || |||||||| || ||||| ||||| ||||||| ||||
Sbjct 114 CGCAGCATAGGAATGATGCCATTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTG 173
Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCAT 156221
| |||| || |||| | | ||||| || || | |||| || ||| |||
Sbjct 174 GCACGAATGTTGTGAACAGAGACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACAT 233
Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265
||||| | ||||| | || |||||||| |||||||| |||
Sbjct 234 TCCTTCAAAGTATCATATATGCCTTCAATGCTATCATCTTTCAT 277
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1465723501051931
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |