Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq322356 125 2e-23 seq27794 125 2e-23 seq6145 125 2e-23 seq314856 105 2e-17 >seq322356 Length=2453 Score = 125 bits (138), Expect = 2e-23 Identities = 314/471 (67%), Gaps = 16/471 (3%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCC 288948 ||||| || ||||| |||||||| | |||| ||| | | || ||| |||||| Sbjct 632 ATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGTGTTACCCTCAAAACCATCC 691 Query 288949 ATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCA 289008 || ||| |||| |||||||| || ||||| ||||||||||| |||| || Sbjct 692 ATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTG---CCTC------CA 742 Query 289009 CCCGAATC--GCTCCtttttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || | || | |||| ||| ||||||||||||||||| |||| || | | || Sbjct 743 CCA-ATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 801 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 || | |||| | || | ||| | || | || || || || |||| |||||| Sbjct 802 AGGTGCGTTTTCCTTAGCCTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACCAAC 861 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTG 289183 | ||||||| ||||| |||||| | || | | || | || | ||| ||||| || | Sbjct 862 AAACATTTCAACAAACTCAGAACCTGAGA-TAGAGAAAAAAGGAACACCAGCTTCACCAG 920 Query 289184 CTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCT 289243 | | |||| |||| || || ||||| || ||||| || || || | | ||||| || | Sbjct 921 CAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGGAGGGCCAACAAGAAGAACCCCTT 980 Query 289244 TTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTT 289303 | || | || ||| ||| | || ||||||| ||||||| || || || | || Sbjct 981 TAGGAATGCGAGCTCCAACAGCAGTGAATCTCTCAGGCTTCTTTAAGAACTCCACCACTT 1040 Query 289304 CCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 || ||| || | || || ||||| || || |||||| |||| |||| Sbjct 1041 CCACAAAATCCTGCTTGGCTTCATCCACCCCAGCAACATCATCAAATGTAA 1091 >seq27794 Length=2292 Score = 125 bits (138), Expect = 2e-23 Identities = 234/341 (69%), Gaps = 2/341 (1%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| |||||| | |||||| || |||||| ||| | | | | Sbjct 2088 ATTTCTCACAGTCCCATCATATTTGACCATAATATCCTCCATAGCCTTCACCAGTCTCCT 2029 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||||||||| |||||| || || || ||||| || ||||| | | ||| || Sbjct 2028 CTGGATATAACCAGTCTCAGATGTCTTGACTGCAGTATCTATAAGACCTTCCCTACCTCC 1969 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| || || | ||| | || ||| || || | || |||| || || Sbjct 1968 CATAGCATGAAAAAAGAACTCCTGTGGAGTTAGTCCTTGAAGGTATGAATTCTCTACAAA 1909 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCAT 302776 ||||| || || || |||| ||| || || ||||||| || | || | | | Sbjct 1908 GCCACGACTTTCAGGTCCATAGTCGTCCTTAGTGAAATGTGGCAAAGTGCGGTCTATGA- 1850 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 |||| ||||| || || || || ||||| ||||||||||| | || | | ||||||| | Sbjct 1849 AGCCATATGGAATTCGTTTACCCTCAACATTCTGCTGTCCAACACAAGCAGTCATCTGTG 1790 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 | ||||| | | ||| ||||| || || || | |||||| Sbjct 1789 ATATATTGATAAAACTTCCCTTCGATCCGGCTGTAACCATA 1749 >seq6145 Length=3537 Score = 125 bits (138), Expect = 2e-23 Identities = 234/341 (69%), Gaps = 2/341 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 |||||| || ||| ||||| | |||||| || |||||| ||| | | | | Sbjct 3087 ATTTCTCACAGTCCCGTCATATTTGACCATAATATCCTCCATAGCCTTCACCAGTCTCCT 3146 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| ||||| |||||| || || || ||||| || ||||| | | ||| || Sbjct 3147 CTGGATATACCCAGTCTCAGATGTCTTGACTGCAGTATCTATAAGACCTTCCCTACCTCC 3206 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | ||| | || ||| |||| || | || | || || || Sbjct 3207 CATAGCATGAAAGAAGAACTCCTGTGGAGTTAGTCCCCGAAGGTATGAATTTTCTACAAA 3266 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTCAT 302776 ||||| || || || |||| ||| || ||||| |||| || | || | | | Sbjct 3267 GCCACGACTTTCTGGTCCATAGTCGTCCTTAGTGAAGTGGGGCAAAGTACGGTCTATGA- 3325 Query 302777 AGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCG 302836 | || |||||||| || || || ||||| ||||||||||||| || | | ||||||| | Sbjct 3326 ACCCATATGGGATTCGTTTACCCTCAACATTCTGCTGTCCCACACAAGCAGTCATCTGTG 3385 Query 302837 AAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 | || || | | ||| ||||| || || || | |||||| Sbjct 3386 ATATGTTGATAAAACTTCCCTTAGATCCGGCTGTAACCATA 3426 Score = 95.1 bits (104), Expect = 4e-14 Identities = 79/97 (81%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 301864 ACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGT 301923 ||||||||| ||||||| ||||| ||||| | ||||| | |||||||||||| |||| Sbjct 2392 ACACCAGCATAGTGGAATGTATTGAGAGTCATCTGAGTGGCAGGCTCACCAATAGATTGT 2451 Query 301924 GCCGCAATCATACCAACCATTTCTCCTGGTGCTACAA 301960 || |||| ||||||| |||||| || |||| ||||| Sbjct 2452 GCAGCAACAATACCAATCATTTCCCCAGGTGATACAA 2488 >seq314856 Length=966 Score = 105 bits (116), Expect = 2e-17 Identities = 158/224 (71%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 156045 AAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACA 156101 ||| |||| ||||| ||||| ||| ||||| ||||| || ||||| | ||| || || Sbjct 54 AAAGTACCTTTCCTTTTGCCTCCCCCCTGATCAACATAACGGGCAGTATCATTAAAAACT 113 Query 156102 CCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGAT 156161 | ||||||||||| || |||||||| || ||||| ||||| ||||||| |||| Sbjct 114 CGCAGCATAGGAATGATGCCATTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTG 173 Query 156162 GAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCAT 156221 | |||| || |||| | | ||||| || || | |||| || ||| ||| Sbjct 174 GCACGAATGTTGTGAACAGAGACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACAT 233 Query 156222 TCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 ||||| | ||||| | || |||||||| |||||||| ||| Sbjct 234 TCCTTCAAAGTATCATATATGCCTTCAATGCTATCATCTTTCAT 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1465723501051931