Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq165556 98.7 1e-15 seq299844 95.1 1e-14 seq171293 84.2 2e-11 >seq165556 Length=2133 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 151994 AGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTG 152053 ||||||| |||||||||||| | |||||| | ||||||||| || ||| ||||| Sbjct 1530 AGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTG 1589 Query 152054 TCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAG 152113 | ||||| ||||| ||| | ||||| || ||||| || ||| | ||||| ||| Sbjct 1590 CAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCTGTTGACCAGTC 1649 Query 152114 TGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATT-CGTGCTGACCTGTGTTG 152172 ||| || ||| | ||||| |||| | |||| ||| || ||||||||||||| Sbjct 1650 TGATGGTTCCTTCCTTGATGACAACCA-AATGAAGGAGGGTTATTTGCTGACCTGTGTCT 1708 Query 152173 CATATCCAACTTCTGA 152188 |||| ||| |||| || Sbjct 1709 CATACCCATCTTCAGA 1724 >seq299844 Length=657 Score = 95.1 bits (104), Expect = 1e-14 Identities = 134/186 (72%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 152004 TACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGT 152063 |||||||||||| | |||||| | |||| |||| || ||| ||||| | ||||| Sbjct 360 TACATCTTGGATTCAGCTGAGAATGCAGGAATTGAGCTGCCCTATTCTTGCAGGGCTGGG 301 Query 152064 GCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAATCA 152123 ||||| ||| | ||||| || ||||| || |||||||| || ||| ||| || Sbjct 300 GCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTACAGTGGACCAGTCTGATGGTTCC 241 Query 152124 TTCTTGGATGATGACCAGATTGAATCAGGATT-CGTGCTGACCTGTGTTGCATATCCAAC 152182 ||| | ||||| |||| | ||| ||| || ||||||||||||||| | |||||| | Sbjct 240 TTCCTTGATGACAACCA-AACGAAGGAGGGTTATGTGCTGACCTGTGTTTCGTATCCATC 182 Query 152183 TTCTGA 152188 || || Sbjct 181 CTCAGA 176 >seq171293 Length=1713 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 152046 TACTCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTT 152105 ||||| ||||| || ||| | || || || || || || ||| |||| ||| || || Sbjct 1328 TACTCCTGTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTC 1387 Query 152106 GATCAGAGTGACCA-ATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGAC 152164 || ||| |||||| | | |||||| |||||||||||||||| || || || || || Sbjct 1388 GACCAGTCTGACCAGAGCTTTCTTG-ATGATGACCAGATTGATGGTGGCTTTGTCCTCAC 1446 Query 152165 CTGTGTTGCATATCCAACTTCTGATGTCACCCT 152197 ||||| || ||||| | |||||||| || || Sbjct 1447 TTGTGTCGCCTATCCTTCCTCTGATGTTACTCT 1479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547402179704360