Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_021536.1
Length=171797
Score E
Sequences producing significant alignments: (Bits) Value
seq165556 98.7 1e-15
seq299844 95.1 1e-14
seq171293 84.2 2e-11
>seq165556
Length=2133
Score = 98.7 bits (108), Expect = 1e-15
Identities = 141/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 151994 AGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTG 152053
||||||| |||||||||||| | |||||| | ||||||||| || ||| |||||
Sbjct 1530 AGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTG 1589
Query 152054 TCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAG 152113
| ||||| ||||| ||| | ||||| || ||||| || ||| | ||||| |||
Sbjct 1590 CAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCTGTTGACCAGTC 1649
Query 152114 TGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATT-CGTGCTGACCTGTGTTG 152172
||| || ||| | ||||| |||| | |||| ||| || |||||||||||||
Sbjct 1650 TGATGGTTCCTTCCTTGATGACAACCA-AATGAAGGAGGGTTATTTGCTGACCTGTGTCT 1708
Query 152173 CATATCCAACTTCTGA 152188
|||| ||| |||| ||
Sbjct 1709 CATACCCATCTTCAGA 1724
>seq299844
Length=657
Score = 95.1 bits (104), Expect = 1e-14
Identities = 134/186 (72%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 152004 TACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTTGTCGTGCTGGT 152063
|||||||||||| | |||||| | |||| |||| || ||| ||||| | |||||
Sbjct 360 TACATCTTGGATTCAGCTGAGAATGCAGGAATTGAGCTGCCCTATTCTTGCAGGGCTGGG 301
Query 152064 GCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAGAGTGACCAATCA 152123
||||| ||| | ||||| || ||||| || |||||||| || ||| ||| ||
Sbjct 300 GCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTACAGTGGACCAGTCTGATGGTTCC 241
Query 152124 TTCTTGGATGATGACCAGATTGAATCAGGATT-CGTGCTGACCTGTGTTGCATATCCAAC 152182
||| | ||||| |||| | ||| ||| || ||||||||||||||| | |||||| |
Sbjct 240 TTCCTTGATGACAACCA-AACGAAGGAGGGTTATGTGCTGACCTGTGTTTCGTATCCATC 182
Query 152183 TTCTGA 152188
|| ||
Sbjct 181 CTCAGA 176
>seq171293
Length=1713
Score = 84.2 bits (92), Expect = 2e-11
Identities = 112/153 (73%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 152046 TACTCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTT 152105
||||| ||||| || ||| | || || || || || || ||| |||| ||| || ||
Sbjct 1328 TACTCCTGTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTC 1387
Query 152106 GATCAGAGTGACCA-ATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGAC 152164
|| ||| |||||| | | |||||| |||||||||||||||| || || || || ||
Sbjct 1388 GACCAGTCTGACCAGAGCTTTCTTG-ATGATGACCAGATTGATGGTGGCTTTGTCCTCAC 1446
Query 152165 CTGTGTTGCATATCCAACTTCTGATGTCACCCT 152197
||||| || ||||| | |||||||| || ||
Sbjct 1447 TTGTGTCGCCTATCCTTCCTCTGATGTTACTCT 1479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547402179704360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |