Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq138072 93.3 5e-13
seq88220 93.3 5e-13
seq114940 87.8 2e-11
seq73990 87.8 2e-11
>seq138072
Length=790
Score = 93.3 bits (102), Expect = 5e-13
Identities = 118/160 (74%), Gaps = 2/160 (1%)
Strand=Plus/Minus
Query 1592135 GACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAAC 1592194
||||| || || ||||||||||| | | ||| ||||| |||| | || ||||||
Sbjct 595 GACAAAGAATTCGTCGACGTCGAGCTGGGCCTCCTGTTTGATCTGATATTGGCAGCCAAC 536
Query 1592195 TACCTCGACATCAAGCCTCTGCTCGATCTTGGG-TGCAAGTCTGTGGCCAACATGATCAA 1592253
|| || |||||||| ||||| || |||| ||| || ||||||| ||||||||||
Sbjct 535 TATCTGAACATCAAGGAGCTGCTAGA-CTTGACATGCCAGACTGTGGCAGACATGATCAA 477
Query 1592254 GGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293
||| ||| | ||||| ||||| ||| || || ||||||
Sbjct 476 GGGAAAGACTCCCGAAGAGATTCGCCGGATTTTCAACATC 437
>seq88220
Length=866
Score = 93.3 bits (102), Expect = 5e-13
Identities = 120/163 (74%), Gaps = 2/163 (1%)
Strand=Plus/Plus
Query 1592135 GACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAAC 1592194
||||| || || | ||||||||||| | ||| ||||| |||| | || ||||||
Sbjct 115 GACAAAGATTTCGTCAACGTCGAGCAGGACCTCCTGTTTGATCTGATATTGGCAGCCAAC 174
Query 1592195 TACCTCGACATCAAGCCTCTGCTCGATCTTG-GGTGCAAGTCTGTGGCCAACATGATCAA 1592253
|| || ||||| | ||||| || |||| ||| || ||||||| ||||||||||
Sbjct 175 TATCTAAACATCGCGGGGCTGCTGGA-CTTGACATGCCAGGCTGTGGCGGACATGATCAA 233
Query 1592254 GGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296
||| ||| | ||||| | || |||||||| || |||||||||
Sbjct 234 GGGAAAGACTCCCGAACAAATTCGCAAGACTTTCAACATCAAG 276
>seq114940
Length=727
Score = 87.8 bits (96), Expect = 2e-11
Identities = 99/130 (76%), Gaps = 2/130 (2%)
Strand=Plus/Plus
Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227
|| ||||| |||| | || |||||||| || |||||||| || || || ||||
Sbjct 479 CTGTTTGATCTGATATTGGCAGCCAACTATCTGAACATCAAGGAGCTACTGGA-CTTGAC 537
Query 1592228 -TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTT 1592286
||| || ||||||| ||||||||||||| ||| | ||||| ||||| ||| |||| ||
Sbjct 538 ATGCCAGACTGTGGCAGACATGATCAAGGGAAAGACTCCCGAAGAGATTCGCCAGACTTT 597
Query 1592287 TAACATCAAG 1592296
|||||||||
Sbjct 598 CAACATCAAG 607
>seq73990
Length=402
Score = 87.8 bits (96), Expect = 2e-11
Identities = 109/147 (74%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 1592151 ACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 1592210
||||||||||| | ||| ||||| |||| | || ||||||| || ||||| |
Sbjct 38 ACGTCGAGCAGGACCTCCTGTTTGATCTGATATTGGCATCCAACTATCTAAACATCGCGG 97
Query 1592211 CTCTGCTCGATCTTGGG-TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAG 1592269
||||| || || | ||| || ||||||| ||||||||||||| ||| | |||||
Sbjct 98 GGCTGCTGGA-CTCGACATGCCAGGCTGTGGCGGACATGATCAAGGGAAAGACTCCCGAA 156
Query 1592270 GAGATCCGCAAGACCTTTAACATCAAG 1592296
|||| |||||||| || |||||||||
Sbjct 157 CAGATTCGCAAGACTTTCAACATCAAG 183
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6080618930847671
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |