Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq138072 93.3 5e-13 seq88220 93.3 5e-13 seq114940 87.8 2e-11 seq73990 87.8 2e-11 >seq138072 Length=790 Score = 93.3 bits (102), Expect = 5e-13 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 1592135 GACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAAC 1592194 ||||| || || ||||||||||| | | ||| ||||| |||| | || |||||| Sbjct 595 GACAAAGAATTCGTCGACGTCGAGCTGGGCCTCCTGTTTGATCTGATATTGGCAGCCAAC 536 Query 1592195 TACCTCGACATCAAGCCTCTGCTCGATCTTGGG-TGCAAGTCTGTGGCCAACATGATCAA 1592253 || || |||||||| ||||| || |||| ||| || ||||||| |||||||||| Sbjct 535 TATCTGAACATCAAGGAGCTGCTAGA-CTTGACATGCCAGACTGTGGCAGACATGATCAA 477 Query 1592254 GGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATC 1592293 ||| ||| | ||||| ||||| ||| || || |||||| Sbjct 476 GGGAAAGACTCCCGAAGAGATTCGCCGGATTTTCAACATC 437 >seq88220 Length=866 Score = 93.3 bits (102), Expect = 5e-13 Identities = 120/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 1592135 GACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAAC 1592194 ||||| || || | ||||||||||| | ||| ||||| |||| | || |||||| Sbjct 115 GACAAAGATTTCGTCAACGTCGAGCAGGACCTCCTGTTTGATCTGATATTGGCAGCCAAC 174 Query 1592195 TACCTCGACATCAAGCCTCTGCTCGATCTTG-GGTGCAAGTCTGTGGCCAACATGATCAA 1592253 || || ||||| | ||||| || |||| ||| || ||||||| |||||||||| Sbjct 175 TATCTAAACATCGCGGGGCTGCTGGA-CTTGACATGCCAGGCTGTGGCGGACATGATCAA 233 Query 1592254 GGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||| ||| | ||||| | || |||||||| || ||||||||| Sbjct 234 GGGAAAGACTCCCGAACAAATTCGCAAGACTTTCAACATCAAG 276 >seq114940 Length=727 Score = 87.8 bits (96), Expect = 2e-11 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || ||||| |||| | || |||||||| || |||||||| || || || |||| Sbjct 479 CTGTTTGATCTGATATTGGCAGCCAACTATCTGAACATCAAGGAGCTACTGGA-CTTGAC 537 Query 1592228 -TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTT 1592286 ||| || ||||||| ||||||||||||| ||| | ||||| ||||| ||| |||| || Sbjct 538 ATGCCAGACTGTGGCAGACATGATCAAGGGAAAGACTCCCGAAGAGATTCGCCAGACTTT 597 Query 1592287 TAACATCAAG 1592296 ||||||||| Sbjct 598 CAACATCAAG 607 >seq73990 Length=402 Score = 87.8 bits (96), Expect = 2e-11 Identities = 109/147 (74%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 1592151 ACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGC 1592210 ||||||||||| | ||| ||||| |||| | || ||||||| || ||||| | Sbjct 38 ACGTCGAGCAGGACCTCCTGTTTGATCTGATATTGGCATCCAACTATCTAAACATCGCGG 97 Query 1592211 CTCTGCTCGATCTTGGG-TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAG 1592269 ||||| || || | ||| || ||||||| ||||||||||||| ||| | ||||| Sbjct 98 GGCTGCTGGA-CTCGACATGCCAGGCTGTGGCGGACATGATCAAGGGAAAGACTCCCGAA 156 Query 1592270 GAGATCCGCAAGACCTTTAACATCAAG 1592296 |||| |||||||| || ||||||||| Sbjct 157 CAGATTCGCAAGACTTTCAACATCAAG 183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6080618930847671