Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq155405 100 2e-16 seq167275 95.1 1e-14 seq302619 89.7 4e-13 seq1583 89.7 4e-13 seq167078 84.2 2e-11 seq32342 82.4 6e-11 >seq155405 Length=1148 Score = 100 bits (110), Expect = 2e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||||| || || | ||| ||||||||| ||||||||| | ||| | || ||| Sbjct 297 GATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTGCAGAC 238 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||||||||||||||||| || || |||||| |||| | || |||| || |||| Sbjct 237 TACAACATTCAAAAGGAATCAACCTTGCACTTGGTTCTCCGACTGCGTGGTGGAA 183 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || ||| | ||||| || ||||| || | || ||| | Sbjct 639 ATGCAGATCTTTGTTAAGACTCTCACAGGGAAGACCATCACATTGGAGGTTGAGAGTTCT 580 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| ||| | || || |||||| || || || ||| | ||| |||||| Sbjct 579 GATACAATCGATAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATACCCCCAGATCAG 520 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || |||||||| ||||| | | || | || || ||||| Sbjct 519 CAGAGGCTCATCTTTGCCGGCAAACAGCTAGAGGATGGCCGCACCCTTGCCGATTACAAT 460 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || |||||||||||||| | ||| ||||| | | |||| || |||| Sbjct 459 ATCCAAAAGGAGTCTACTCTTCACCTGGTGCTCCGTCTGCGTGGTGGAA 411 >seq167275 Length=2206 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || || | || || || || || || | || ||| ||| Sbjct 1034 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACATTGGAGGTGGAAAGCTC 975 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | | || ||| |||||| || || || || | ||| |||| Sbjct 974 T-GATACAATTGACAATGTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGATC 916 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| ||||||||| | ||||||| | ||| | || ||||||| Sbjct 915 AGCAGAGGCTCATCTTTGCAGGTAAACAGTTAGAGGACGGAAGAACTCTTGCAGACTACA 856 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||| || || |||||| |||| Sbjct 855 ACATTCAAAAGGAATCAACATTGCACTTGGT 825 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| | |||||||| || || ||| |||| || ||| Sbjct 1489 ATGCAGATCTTTGTGAAAACCCTCACAGGCAAGACTATCACCCTCGAGGTTGAAAGCTCT 1430 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || || |||||| || || || || | ||| || || Sbjct 1429 -GACACTATTGACAATGTCAAGGCAAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCA 1371 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || || || | ||| || || ||||| ||||||| | |||| | || |||||||| Sbjct 1370 GCAAAGGCTGATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGAACACTTGCTGACTACAA 1311 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||| ||||| || | ||| ||||| | ||| | || || || Sbjct 1310 CATTCAAAAAGAGTCCACCCTCCACCTGGTGCTTAGACTCCGTGGTGG 1263 >seq302619 Length=692 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| || ||| | || || |||||||| ||| | || ||| | Sbjct 330 ATGCAAATCTTTGTGAAGACTCTCACTGGGAAAACCATAACCTTGGAGGTTGAGAGTTCT 389 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||||| |||||||| || | || || ||| Sbjct 390 GACACCATTGACAACGTGAAGGCAAAGATTCAGGATAAAGAGGGTATCCCACCAGACCAG 449 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||||| || | ||| || || ||||| ||||| | | || |||| || |||||| Sbjct 450 CAGAGACTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACCCTGGCTGATTACAAC 509 Query 107736 ATTCAAAAGGAGTCTAC 107752 |||||||||||||| || Sbjct 510 ATTCAAAAGGAGTCCAC 526 >seq1583 Length=2309 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| |||||||| || | || ||||||||||| || | ||| ||| ||| Sbjct 134 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 193 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | || ||| || ||| ||||| || || | ||| || || Sbjct 194 -GACACCATAGATAATGTGAAAGCTAAAATTCAGGATAAGGAGGGTATTCCCCCAGACCA 252 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| ||||| ||||| ||||| | | ||| | || ||||| || Sbjct 253 GCAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAA 312 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||||||||||| || ||||| ||||| Sbjct 313 TATTCAAAAGGAGTCCACTCTGCACTTGGTG 343 >seq167078 Length=762 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 107649 GATAAAGAAGGCGTGCCCGTGGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAG 107708 ||||| |||||| | || ||||||||||||||| |||| ||| ||||| ||| |||| Sbjct 502 GATAAGGAAGGCATCCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAA 561 Query 107709 GACGCCAAAACAATGGCGGACTACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || | ||| | || || || || |||||||| ||||| || | ||| | || ||| Sbjct 562 GATGGTCGAACCCTTGCAGATTATAATATTCAAAAAGAGTCAACTCTCCACCTTGTTTTG 621 Query 107769 AGATTGCGAGGGGGAAATA 107787 || ||| | || |||| || Sbjct 622 AGGTTGAGGGGAGGAACTA 640 >seq32342 Length=717 Score = 82.4 bits (90), Expect = 6e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||||| || || | ||| ||||||||| ||||||| | | ||| | || || Sbjct 369 GATCAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGATGGAAGAACTCTTGCAGAT 310 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATG 107762 ||||||||||||||||| || || |||||| || Sbjct 309 TACAACATTCAAAAGGAATCGACATTGCACTTG 277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397305804153307