Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq167078 95.1 2e-14
seq104817 93.3 7e-14
seq167275 91.5 2e-13
>seq167078
Length=762
Score = 95.1 bits (104), Expect = 2e-14
Identities = 100/132 (76%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 146126 TAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGA 146185
||| |||||||| || || ||||| || ||||| |||||||| ||||| || || || ||
Sbjct 504 TAAGGAAGGCATCCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAAGA 563
Query 146186 TAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245
| | |||| | ||||||||||||| |||||||| || ||| |||| | || || |
Sbjct 564 TGGTCGAACCCTTGCAGATTATAATATTCAAAAAGAGTCAACTCTCCACCTTGTTTTGAG 623
Query 146246 ATTAAGAGGAGG 146257
|| || |||||
Sbjct 624 GTTGAGGGGAGG 635
>seq104817
Length=483
Score = 93.3 bits (102), Expect = 7e-14
Identities = 99/131 (76%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186
|| |||||||| || || ||||| || ||||| |||||||| ||||| || || || |||
Sbjct 226 AAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAAGAT 285
Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246
| |||| | ||||||||||||| |||||||| || ||| |||| | || || |
Sbjct 286 GGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTGTTGAGG 345
Query 146247 TTAAGAGGAGG 146257
|| || |||||
Sbjct 346 TTGAGGGGAGG 356
>seq167275
Length=2206
Score = 91.5 bits (100), Expect = 2e-13
Identities = 145/208 (70%), Gaps = 0/208 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| || | || || || ||||| ||||| |||||| | || || ||| |
Sbjct 804 TGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTCAG 745
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| | ||||| || || || || |||||||||||||| || || || |
Sbjct 744 ACACAATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCAGC 685
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211
| || ||||| |||||||| || || | || ||| ||| || | ||||||| || |
Sbjct 684 AGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGATGGTAGGACACTGGCAGATTACAACA 625
Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239
|||| || || || ||| | ||||| ||
Sbjct 624 TACAGAAGGAGTCAACTCTGCATTTGGT 597
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 782990651345960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |