Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq167078 95.1 2e-14 seq104817 93.3 7e-14 seq167275 91.5 2e-13 >seq167078 Length=762 Score = 95.1 bits (104), Expect = 2e-14 Identities = 100/132 (76%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 146126 TAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGA 146185 ||| |||||||| || || ||||| || ||||| |||||||| ||||| || || || || Sbjct 504 TAAGGAAGGCATCCCTCCGGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAAGA 563 Query 146186 TAATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | | |||| | ||||||||||||| |||||||| || ||| |||| | || || | Sbjct 564 TGGTCGAACCCTTGCAGATTATAATATTCAAAAAGAGTCAACTCTCCACCTTGTTTTGAG 623 Query 146246 ATTAAGAGGAGG 146257 || || ||||| Sbjct 624 GTTGAGGGGAGG 635 >seq104817 Length=483 Score = 93.3 bits (102), Expect = 7e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 146127 AAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAACAATTAGATGAT 146186 || |||||||| || || ||||| || ||||| |||||||| ||||| || || || ||| Sbjct 226 AAGGAAGGCATCCCTCCAGATCAGCAGAGACTGATTTTTGCTGGTAAGCAGTTGGAAGAT 285 Query 146187 AATAGAACGTTAACAGATTATAATATACAAAAAGAATCGACTATCCATTTAGTATTACGA 146246 | |||| | ||||||||||||| |||||||| || ||| |||| | || || | Sbjct 286 GGTCGAACCCTTGCAGATTATAATATCCAAAAAGAGTCAACTCTCCACCTTGTGTTGAGG 345 Query 146247 TTAAGAGGAGG 146257 || || ||||| Sbjct 346 TTGAGGGGAGG 356 >seq167275 Length=2206 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || || ||||| ||||| |||||| | || || ||| | Sbjct 804 TGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTCAG 745 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || || || || |||||||||||||| || || || | Sbjct 744 ACACAATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCAGC 685 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || ||||| |||||||| || || | || ||| ||| || | ||||||| || | Sbjct 684 AGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGATGGTAGGACACTGGCAGATTACAACA 625 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 |||| || || || ||| | ||||| || Sbjct 624 TACAGAAGGAGTCAACTCTGCATTTGGT 597 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 782990651345960