Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq171293 125 9e-24 seq165556 95.1 1e-14 seq299844 93.3 5e-14 >seq171293 Length=1713 Score = 125 bits (138), Expect = 9e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586 |||||||| ||||| || || || || || || |||||| | || || || ||||||| Sbjct 1275 CTGATGATGTCTACATTCTCGACGCCGCCGAGGAGGCAGGTCTCGACCTCCCTTACTCCT 1334 Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGT 138646 |||| || ||| | || ||| |||| || || || | ||||| || || || || |||| Sbjct 1335 GTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTCGACCAGT 1394 Query 138647 CTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAG 138706 |||||||| || |||||||||||||| |||| | || ||| || | ||||| || | Sbjct 1395 CTGACCAGAGCTTTCTTGATGATGACCAGATTGATGGTGGCTTTGTCCTCACTTGTGTCG 1454 Query 138707 CATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755 | || || | || ||| || ||||||| | || ||||| || || Sbjct 1455 CCTATCCTTCCTCTGATGTTACTCTTGAAACCCACAAGGAGGAGGAGCT 1503 >seq165556 Length=2133 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576 |||||| | | ||||| |||||| | ||| | ||||| | ||||| |||| || Sbjct 1519 TTTGACGCTCCAGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTG 1578 Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636 ||||| || || | ||||| ||||| || |||||||| || || | || | ||| || Sbjct 1579 CCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCT 1638 Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATT-TATCAT 138695 || || |||||||| || ||||||||||| |||||| || || ||| || | | | Sbjct 1639 GTTGACCAGTCTGATGGTTCCTTCCTTGATGACAACCAAA-TGAAGGAGGGTTATTTGCT 1697 Query 138696 GACTTGCGTAGCATACCCCACATCCGATTGT 138726 ||| || || ||||||| | || || ||| Sbjct 1698 GACCTGTGTCTCATACCCATCTTCAGACTGT 1728 >seq299844 Length=657 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/170 (72%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 138507 AGAACAAATCTTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGG 138566 ||||| ||| |||| | | |||||| |||||| | ||| | ||||| | ||||| Sbjct 389 AGAACGAAT--TTGATGCTCCAGATGATGCTTACATCTTGGATTCAGCTGAGAATGCAGG 332 Query 138567 TATTGATCTTCCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGT 138626 ||||| || ||||| || || | ||||| ||||| || |||||||| || || | || Sbjct 331 AATTGAGCTGCCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGT 272 Query 138627 TGAAGGAACTGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAA 138676 | ||| || || || |||||||| || ||||||||||| |||||| Sbjct 271 AGCAGGTACAGTGGACCAGTCTGATGGTTCCTTCCTTGATGACAACCAAA 222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603220584633080