Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_023587.1
Length=189311
Score E
Sequences producing significant alignments: (Bits) Value
seq171293 125 9e-24
seq165556 95.1 1e-14
seq299844 93.3 5e-14
>seq171293
Length=1713
Score = 125 bits (138), Expect = 9e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 138527 CTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTTCCCTACTCCT 138586
|||||||| ||||| || || || || || || |||||| | || || || |||||||
Sbjct 1275 CTGATGATGTCTACATTCTCGACGCCGCCGAGGAGGCAGGTCTCGACCTCCCTTACTCCT 1334
Query 138587 GTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACTGTAGATCAGT 138646
|||| || ||| | || ||| |||| || || || | ||||| || || || || ||||
Sbjct 1335 GTCGCGCCGGTTCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTCGACCAGT 1394
Query 138647 CTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATTTATCATGACTTGCGTAG 138706
|||||||| || |||||||||||||| |||| | || ||| || | ||||| || |
Sbjct 1395 CTGACCAGAGCTTTCTTGATGATGACCAGATTGATGGTGGCTTTGTCCTCACTTGTGTCG 1454
Query 138707 CATACCCCACATCCGATTGTATAATTGAAACTGAAAAAGAGGACGAACT 138755
| || || | || ||| || ||||||| | || ||||| || ||
Sbjct 1455 CCTATCCTTCCTCTGATGTTACTCTTGAAACCCACAAGGAGGAGGAGCT 1503
>seq165556
Length=2133
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 138517 TTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGGTATTGATCTT 138576
|||||| | | ||||| |||||| | ||| | ||||| | ||||| |||| ||
Sbjct 1519 TTTGACGCTCCAGATGACTCTTACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTG 1578
Query 138577 CCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGTTGAAGGAACT 138636
||||| || || | ||||| ||||| || |||||||| || || | || | ||| ||
Sbjct 1579 CCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCT 1638
Query 138637 GTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAATTGCAGCAGGATT-TATCAT 138695
|| || |||||||| || ||||||||||| |||||| || || ||| || | | |
Sbjct 1639 GTTGACCAGTCTGATGGTTCCTTCCTTGATGACAACCAAA-TGAAGGAGGGTTATTTGCT 1697
Query 138696 GACTTGCGTAGCATACCCCACATCCGATTGT 138726
||| || || ||||||| | || || |||
Sbjct 1698 GACCTGTGTCTCATACCCATCTTCAGACTGT 1728
>seq299844
Length=657
Score = 93.3 bits (102), Expect = 5e-14
Identities = 123/170 (72%), Gaps = 2/170 (1%)
Strand=Plus/Minus
Query 138507 AGAACAAATCTTTGACTGTGCTGATGATCAGTACATCCTTGATGCTGCTGATGAAGCAGG 138566
||||| ||| |||| | | |||||| |||||| | ||| | ||||| | |||||
Sbjct 389 AGAACGAAT--TTGATGCTCCAGATGATGCTTACATCTTGGATTCAGCTGAGAATGCAGG 332
Query 138567 TATTGATCTTCCCTACTCCTGTCGTGCTGGTGCATGTTCTACCTGTGCTGGTAAATTAGT 138626
||||| || ||||| || || | ||||| ||||| || |||||||| || || | ||
Sbjct 331 AATTGAGCTGCCCTATTCTTGCAGGGCTGGGGCATGCTCCACCTGTGCAGGAAAGATGGT 272
Query 138627 TGAAGGAACTGTAGATCAGTCTGACCAGTCTTTCCTTGATGATGACCAAA 138676
| ||| || || || |||||||| || ||||||||||| ||||||
Sbjct 271 AGCAGGTACAGTGGACCAGTCTGATGGTTCCTTCCTTGATGACAACCAAA 222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 603220584633080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |