Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq16442 107 1e-18 seq20182 105 4e-18 seq1583 102 5e-17 seq167275 95.1 8e-15 seq155405 89.7 3e-13 seq33539 89.7 3e-13 seq55815 87.8 1e-12 seq40208 86.0 4e-12 >seq16442 Length=1968 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || ||||| ||| || || |||||||| |||| ||| || || |||| || Sbjct 425 CACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCCTC 366 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | ||||||||||| || || | |||||||| || |||| | || || ||||| Sbjct 365 GAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCTTG 306 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || ||| |||| ||| | ||||||| || ||||| || | ||||||||| | Sbjct 305 GATCTTGGCCTTC-ACATTGTCGATGGTGTCGGAGGACTCCACCTCCAACGTGATCGTCT 247 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| || ||||||||||| Sbjct 246 TCCCCGTTAGGGTTTTCACGAAGATCTGCAT 216 >seq20182 Length=796 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||||||| || ||| || || || ||||||||||| | Sbjct 145 ACCACCACGGAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGC 204 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | || ||||||||||| || | | |||||| ||| | || Sbjct 205 CAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGG 264 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || ||||| ||| || | | |||| ||| | |||||| || |||| Sbjct 265 GATACCCTCCTTGTCCTGAATCTT-GGCCTTGACATTGTCAATGGTGTCAGAAGACTCCA 323 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || ||||| || || || || |||||||||||| Sbjct 324 CCTCAAGGGTGATGGTCTTTCCTGTCAAGGTCTTGACGAAGATCTGCATA 373 >seq1583 Length=2309 Score = 102 bits (112), Expect = 5e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||| || |||||| ||| ||||| || || || || | Sbjct 361 ACCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTGC 302 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| | | | || || | || || || ||||||||||| | |||||| ||| | || Sbjct 301 AAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGG 242 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||| || || || |||||| |||| |||| || | |||||| ||| || Sbjct 241 AATACCCTCCTTATCCTGAATTTTAGCTTTC-ACATTATCTATGGTGTCAGAGCT---TT 186 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || | ||||| ||||| || || | || || |||||||| ||||| Sbjct 185 CCACTTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 134 >seq167275 Length=2206 Score = 95.1 bits (104), Expect = 8e-15 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||||||| ||||| ||| || |||||||||||||| | Sbjct 579 CCACCACGTAGACGGAGCACCAAATGCAGAGTTGACTCCTTCTGTATGTTGTAATCTGCC 638 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 ||||| | | || || | || ||||| ||||| || | | |||||| ||| | || Sbjct 639 AGTGTCCTACCATCCTCAAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGA 698 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | ||||||||||| ||| ||| | | |||| || | ||||| ||| ||| Sbjct 699 ATGCCTTCTTTGTCCTGAATCTTC-GCCTTGACATTATCAATTGTGTCTGAGCT---TTC 754 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || | || || ||||| ||||| || || || |||||||| ||||| Sbjct 755 CACTTCCAAAGTAATAGTTTTCCCTGTCAAAGTCTTCACAAAGATTTGCAT 805 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||| || || ||| ||||||||| || |||||||| | | Sbjct 1035 CCACCACGAAGACGGAGCACCAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCTGCG 1094 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||||| |||||||| || | | |||||||||| | || Sbjct 1095 AGCGTACGGCCATCCTCTAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGG 1154 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTC 33698 | || || ||||| ||| || || | |||| || | ||||| ||| || Sbjct 1155 ATGCCCTCCTTGTCCTGAATCTT-TGCCTTGACATTATCGATTGTGTCAGAGCTC---TC 1210 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || ||||| | || || |||||||||||||| Sbjct 1211 AACCTCCAATGTGATGGTCTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 1261 >seq155405 Length=1148 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || |||||| ||||||||| |||||||| || | |||||| || |||| || Sbjct 659 ACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCGAGTGTCCGCCCGTCCTCA 718 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || || ||||| |||| | || || || | || | || || ||||| Sbjct 719 AGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTGG 778 Query 33661 ATTTTCTGTTTCAACATAGTCACG-GTGTC---GCTTGATTCCACGTCAACCGTGATCGT 33716 || || || || |||| |||| ||||| |||| || || |||| ||||| || Sbjct 779 ATCTT-TGCTTTGACATTGTCAATAGTGTCAGAGCTT---TCAACCTCAAGGGTGATGGT 834 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || ||||| | ||||| |||||||||||||| Sbjct 835 CTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 867 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || ||||| |||||||| || | || || | | |||| ||||| ||||| || ||||| Sbjct 221 TCCTTTTGAATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAG 280 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | | |||||||||| | || | ||| || ||||| || ||| || | ||| Sbjct 281 ATGAGCCTCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGGATCTTCGCCTTGA-CATT 339 Query 33679 GTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 |||| || ||| |||||| || | ||||| || || || || | ||| ||||| Sbjct 340 GTCAATTGTATCGGAGCTTTCCACCTCCAGGGTGATTGTCTTCCCAGTAAGCGTCTTTAC 399 Query 33738 AAAGATCTGCAT 33749 |||||||||||| Sbjct 400 AAAGATCTGCAT 411 Score = 84.2 bits (92), Expect = 1e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 33568 ATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGC 33627 |||||||| || | || || | | |||| ||||| ||||| || ||||| || | | | Sbjct 2 ATGTTGTAGTCTGCAAGAGTTCTTCCGTCCTCCAACTGTTTACCTGCAAAGATGAGCCTC 61 Query 33628 TGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GT 33686 ||||||||| | || | ||| || ||||| ||||| || | |||| |||| || Sbjct 62 TGCTGATCTGGGGGGATACCCTCCTTGTCCTGGATTTT-TGCCTTGACATTGTCAATTGT 120 Query 33687 GTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746 ||| |||||| || | ||||| || || || || | ||| |||||||||||||| Sbjct 121 ATCGGAGCTTTCCACCTCCAAGGTGATTGTCTTCCCAGTAAGCGTCTTTACAAAGATCTG 180 Query 33747 CAT 33749 ||| Sbjct 181 CAT 183 >seq33539 Length=831 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 33550 AGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTT 33609 ||||| ||| || || |||||||| |||| ||| || || |||| || | | |||| Sbjct 3 AGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCCGTCCTCGAGCTATTTT 62 Query 33610 CCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGT 33669 ||| | || || | || ||||| || |||| | || || ||||| || || Sbjct 63 CCGACGAAGATAACGCGTTGCTGGTCCAGCGGGATGCCCTCCTTGTCTTGGATCTTGGCC 122 Query 33670 TTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAA 33728 |||| ||| ||| | ||||||| || ||||| || | ||||||||| || || |||| Sbjct 123 TTCA-CATTGTCGATGGTGTCGGAGGACTCCACCTCCAACGTGATCGTCTTCCCCGTTAG 181 Query 33729 CGTTTTTACAAAGATCTGCAT 33749 ||||| || ||||||||||| Sbjct 182 GGTTTTCACGAAGATCTGCAT 202 >seq55815 Length=911 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | ||| || || |||||| ||| ||||| || || || || Sbjct 361 ACCACCGCGCAGACGAAGCACTAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCAAC 302 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||||| | | | || || | || || || ||||||||||| | || || ||| | || Sbjct 301 AAGTGTCCTTCCATCCTCAAGCTGCTTGCCTGCAAAAATCAACCTTTGTTGGTCTGGGGG 242 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATT 33697 | ||| || ||||| |||||| |||| |||| || | |||||| ||| || Sbjct 241 AATACCCTCCTTGTCTTGAATTTTAGCTTTC-ACATTATCAATGGTGTCAGAGCT---TT 186 Query 33698 CCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| || || |||| ||||| || || | || || |||||||| ||||| Sbjct 185 CCACTTCCACAATGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 134 >seq40208 Length=2036 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||||||| || || ||| || || ||||||||||| | Sbjct 597 CCACCGCGAAGACGGAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAATCAGCC 538 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 | || | |||| || | || |||||||| || ||||| | |||||||||| | || Sbjct 537 AAGGTCCTACCGTCCTCGAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGG 478 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || | | || | ||| | ||||||| || || Sbjct 477 ATCCCTTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGAC 419 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | |||||||| || || |||| ||||| || |||||||||||| Sbjct 418 CTCGAGAGTGATCGTCTTTCCGGTTAGGGTTTTCACGAAGATCTGCATA 370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327409383168960