Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq165556 96.9 4e-15 seq171293 95.1 1e-14 seq299844 91.5 2e-13 >seq165556 Length=2133 Score = 96.9 bits (106), Expect = 4e-15 Identities = 144/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| || ||| |||| || | ||||||||||| | ||||||||| | ||||| Sbjct 1540 TACATCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGG 1599 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 || ||||| |||||||||| || || | ||||| | || ||||||||||| ||| Sbjct 1600 GCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCTGTTGACCAGTCTGATGGTTCC 1659 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTT-TTGACATGTGTTGCATATCCTAC 161304 ||| | ||||| |||| | |||| || || || |||| ||||| |||| || | Sbjct 1660 TTCCTTGATGACAACCA-AATGAAGGAGGGTTATTTGCTGACCTGTGTCTCATACCCATC 1718 Query 161305 TAGCGATTGTGTGATTCAAACT 161326 | || |||||||| || ||| Sbjct 1719 TTCAGACTGTGTGATCCACACT 1740 >seq171293 Length=1713 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 |||||| | || || || || |||||||| | || | || || ||||| || ||| Sbjct 1286 TACATTCTCGACGCCGCCGAGGAGGCAGGTCTCGACCTCCCTTACTCCTGTCGCGCCGGT 1345 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 | ||||||||||| || || || || || || || || ||||||||||||||| | Sbjct 1346 TCCTGCTCTTCCTGCGCCGGCAAGGTTGTTGATGGCACCGTCGACCAGTCTGACCAGAGC 1405 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATTCCTTTTGACATGTGTTGCATATCCT 161302 || | ||||||||||||||||| ||| || | | || ||||| || |||||| Sbjct 1406 TTTCTTGATGATGACCAGATTGATGGTGGCTTTGTCCTCACTTGTGTCGCCTATCCT 1462 >seq299844 Length=657 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 161126 TACATTTTAGATGCAGCAGAAGAGGCAGGAGTTGATATTAACTATTCTTGTCGTGCTGGT 161185 ||||| || ||| |||| || | |||||| |||| | ||||||||| | ||||| Sbjct 360 TACATCTTGGATTCAGCTGAGAATGCAGGAATTGAGCTGCCCTATTCTTGCAGGGCTGGG 301 Query 161186 GCTTGCTCTTCCTGTGCAGGTAAAATTATTTCAGGTACAGTAGACCAGTCTGACCAGTCC 161245 || ||||| |||||||||| || || | |||||||||| ||||||||||| ||| Sbjct 300 GCATGCTCCACCTGTGCAGGAAAGATGGTAGCAGGTACAGTGGACCAGTCTGATGGTTCC 241 Query 161246 TTCTTGGATGATGACCAGATTGAATCTGGATT-CCTTTTGACATGTGTTGCATATCCTAC 161304 ||| | ||||| |||| | ||| || || | |||| |||||| | ||||| | Sbjct 240 TTCCTTGATGACAACCA-AACGAAGGAGGGTTATGTGCTGACCTGTGTTTCGTATCCATC 182 Query 161305 TAGCGATTGTGTGATTCAAACT 161326 || |||||||| || ||| Sbjct 181 CTCAGACTGTGTGATCCACACT 160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557243862610600