Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq16442 96.9 3e-15
seq302619 93.3 4e-14
seq155405 93.3 4e-14
seq167275 89.7 4e-13
seq1583 89.7 4e-13
seq23575 86.0 5e-12
seq37689 82.4 6e-11
>seq16442
Length=1968
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079
||| ||||| | || | |||| || | || || || || || || |||||||||
Sbjct 443 GCCACCGCGGAGGCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 384
Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| | || |||| ||||||||||| |||||| | ||||| ||||| || ||||||||
Sbjct 383 GAGAGTCCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 324
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| ||||| || || ||||||| |||| | || | ||||| | || || ||
Sbjct 323 GATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCCAC 264
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| | || || | || ||||| || |||||||| ||||| |||||
Sbjct 263 CTCCAACGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 216
>seq302619
Length=692
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
|| ||||| | || || || |||||||| ||||| || || | |||| | || ||
Sbjct 538 ACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTCA 479
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
||||| || || || | ||||| | ||| || || || || | ||||||||||||
Sbjct 478 AGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTGA 419
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
||||| |||| | | || | ||||| | ||||| || | ||||| | |||
Sbjct 418 ATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTTC 359
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || ||||| |||||||||||||||||
Sbjct 358 CCAGTGAGAGTCTTCACAAAGATTTGCAT 330
>seq155405
Length=1148
Score = 93.3 bits (102), Expect = 4e-14
Identities = 148/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097
||||| || | || || |||||||| || |||||||| || ||| ||| |||| ||
Sbjct 659 ACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCGAGTGTC-CGCCCGTCCTC 717
Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157
||||| || || || | || || | ||||| ||||| || | ||||| || ||
Sbjct 718 AAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTG 777
Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217
|||||| ||| | | || | |||||| | | |||||| || || || || | ||
Sbjct 778 GATCTTTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTT 837
Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||| || || |||||||||||||| |||||
Sbjct 838 GCCTGTGAGGGTTTTCACAAAGATCTGCAT 867
>seq167275
Length=2206
Score = 89.7 bits (98), Expect = 4e-13
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109
|| || ||||||||||| |||||||| || |||| || |||| |||||||| || ||
Sbjct 1293 GTGGACTCTTTTTGAATGTTGTAGTCAGCAAGTGTT-CGGCCGTCCTCGAGCTGCTTGCC 1351
Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169
|| | || || | || || || || || | ||||| || || |||||| ||
Sbjct 1352 AGCAAAGATCAGCCTTTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTTGCCTT 1411
Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229
| | || | |||||| | | |||||| || || || |||| ||||| || || ||
Sbjct 1412 GACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTCTTGCCTGTGAGGGT 1471
Query 27230 TTTCACAAAGATTTGCAT 27247
|||||||||||| |||||
Sbjct 1472 TTTCACAAAGATCTGCAT 1489
>seq1583
Length=2309
Score = 89.7 bits (98), Expect = 4e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
|| ||||||| || | ||||| || | || || || ||||||||||| ||||| |
Sbjct 360 CCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTG-C 302
Query 27081 ATGTTGCGCTCG-TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139
| || | || || || ||||| ||||| || |||| | | ||| || || || ||
Sbjct 301 AAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGG 242
Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199
| |||||| ||||| || || ||||| | |||| ||||| | | ||| ||
Sbjct 241 AATACCCTCCTTATCCTGAATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCCAC 182
Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
||| | ||| || | |||||| || || || || ||||||||||||||
Sbjct 181 TTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 134
>seq23575
Length=1941
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || ||||||||||| | | | || |||| |||||||| || |||
Sbjct 1587 GTCGACTCCTTCTGGATATTGTAGTCAGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCG 1528
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| | ||||| | ||||||||| || || | ||||| || || ||||||| |||
Sbjct 1527 GCAAAGATGAGCCTCTGTTGATCTGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTG 1468
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | | || | ||||| | | || || || || || | | ||||| || || ||
Sbjct 1467 ACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGACGGTCTTGCCGGTAAGCGTC 1408
Query 27231 TTCACAAAGATTTGCAT 27247
||||||||||| |||||
Sbjct 1407 TTCACAAAGATCTGCAT 1391
>seq37689
Length=540
Score = 82.4 bits (90), Expect = 6e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || ||||||||||||||||| | | || | | || || ||||| |||||
Sbjct 179 GTCGATTCCTTTTGAATATTGTAGTCAACAAGGGTGTGTCCATCCTCAAGCTGCTTACCA 238
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
|| |||| || | ||||| ||||| || | || || || ||| ||| ||| |||
Sbjct 239 GCAAAAATCAGCCTTTGTTGGTCCGGGGGGATGCCTTCCTTGTCGTGGATTTTGGCTTTG 298
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||| | | |||||| || || || || | ||||| || |||||
Sbjct 299 ACATTATCAATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTC 358
Query 27231 TTCACAAAGATTTGCATA 27248
|| || ||||| ||||||
Sbjct 359 TTGACGAAGATCTGCATA 376
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 423260775017256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |