Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq16442 96.9 3e-15 seq302619 93.3 4e-14 seq155405 93.3 4e-14 seq167275 89.7 4e-13 seq1583 89.7 4e-13 seq23575 86.0 5e-12 seq37689 82.4 6e-11 >seq16442 Length=1968 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | || || || || || || ||||||||| Sbjct 443 GCCACCGCGGAGGCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 384 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | || |||| ||||||||||| |||||| | ||||| ||||| || |||||||| Sbjct 383 GAGAGTCCGGCCGTCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGG 324 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| |||| | || | ||||| | || || || Sbjct 323 GATGCCCTCCTTGTCTTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCCAC 264 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | || ||||| || |||||||| ||||| ||||| Sbjct 263 CTCCAACGTGATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 216 >seq302619 Length=692 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | || || || |||||||| ||||| || || | |||| | || || Sbjct 538 ACTAAATGAAGGGTGGACTCCTTTTGAATGTTGTAATCAGCCAGGGTGCGGCCATCCTCA 479 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | ||||| | ||| || || || || | |||||||||||| Sbjct 478 AGCTGCTTCCCAGCAAAGATGAGTCTCTGCTGGTCTGGTGGGATACCCTCTTTATCCTGA 419 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | ||||| | ||||| || | ||||| | ||| Sbjct 418 ATCTTTGCCTTCACGTTGTCAATGGTGTCAGAACTCTCAACCTCCAAGGTTATGGTTTTC 359 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| ||||||||||||||||| Sbjct 358 CCAGTGAGAGTCTTCACAAAGATTTGCAT 330 >seq155405 Length=1148 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || |||||||| || |||||||| || ||| ||| |||| || Sbjct 659 ACCAAGTGGAGAGTGGACTCTTTTTGGATGTTGTAGTCAGCGAGTGTC-CGCCCGTCCTC 717 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| || || || | || || | ||||| ||||| || | ||||| || || Sbjct 718 AAGCTGCTTGCCAGCAAAGATCAGCCTTTGTTGGTCCGGGGGAATTCCCTCCTTGTCTTG 777 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| ||| | | || | |||||| | | |||||| || || || || | || Sbjct 778 GATCTTTGCTTTGACATTGTCAATAGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTT 837 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| || || |||||||||||||| ||||| Sbjct 838 GCCTGTGAGGGTTTTCACAAAGATCTGCAT 867 >seq167275 Length=2206 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || ||||||||||| |||||||| || |||| || |||| |||||||| || || Sbjct 1293 GTGGACTCTTTTTGAATGTTGTAGTCAGCAAGTGTT-CGGCCGTCCTCGAGCTGCTTGCC 1351 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || | || || | || || || || || | ||||| || || |||||| || Sbjct 1352 AGCAAAGATCAGCCTTTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTTGCCTT 1411 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | |||||| | | |||||| || || || |||| ||||| || || || Sbjct 1412 GACATTGTCAATAGTGTCAGAGCTTTCAACCTCGAGGGTGATAGTCTTGCCTGTGAGGGT 1471 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||||||||| ||||| Sbjct 1472 TTTCACAAAGATCTGCAT 1489 >seq1583 Length=2309 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || | ||||| || | || || || ||||||||||| ||||| | Sbjct 360 CCACCGCGCAGACGAAGCACCAAGTGCAGAGTGGACTCCTTTTGAATATTATAGTCTG-C 302 Query 27081 ATGTTGCGCTCG-TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | || | || || || ||||| ||||| || |||| | | ||| || || || || Sbjct 301 AAGTGTCCTTCCATCCTCAAGCTGCTTACCTGCAAAAATCAACCTCTGCTGGTCTGGGGG 242 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | |||||| ||||| || || ||||| | |||| ||||| | | ||| || Sbjct 241 AATACCCTCCTTATCCTGAATTTTAGCTTTCACATTATCTATGGTGTCAGAGCTTTCCAC 182 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| | ||| || | |||||| || || || || |||||||||||||| Sbjct 181 TTCCAAAGTGATGGTTTTGCCGGTAAGGGTCTTGACAAAGATTTGCAT 134 >seq23575 Length=1941 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || ||||||||||| | | | || |||| |||||||| || ||| Sbjct 1587 GTCGACTCCTTCTGGATATTGTAGTCAGCGAGGGTCCGGCCGTCCTCGAGCTGCTTTCCG 1528 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||||||||| || || | ||||| || || ||||||| ||| Sbjct 1527 GCAAAGATGAGCCTCTGTTGATCTGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCTTTG 1468 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || | | ||||| || || || Sbjct 1467 ACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGACGGTCTTGCCGGTAAGCGTC 1408 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 1407 TTCACAAAGATCTGCAT 1391 >seq37689 Length=540 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||||||||||||||| | | || | | || || ||||| ||||| Sbjct 179 GTCGATTCCTTTTGAATATTGTAGTCAACAAGGGTGTGTCCATCCTCAAGCTGCTTACCA 238 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| || | ||||| ||||| || | || || || ||| ||| ||| ||| Sbjct 239 GCAAAAATCAGCCTTTGTTGGTCCGGGGGGATGCCTTCCTTGTCGTGGATTTTGGCTTTG 298 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | |||||| || || || || | ||||| || ||||| Sbjct 299 ACATTATCAATGGTGTCAGAGCTTTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTC 358 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 359 TTGACGAAGATCTGCATA 376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423260775017256