Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq322356 91.5 2e-13 >seq322356 Length=2453 Score = 91.5 bits (100), Expect = 2e-13 Identities = 225/339 (66%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATG---CCAGTCTCATTGTC 11538 ||| || ||||| | | ||||| || |||| |||||||| ||||| | | || Sbjct 625 ATCGAGAATATCTGCCCTGTTAGTTGCTGCAA---CCACAATGATACCAGTGTTACCCTC 681 Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || | | ||||||| || |||||||| |||||||| || Sbjct 682 AAAACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCTCC 741 Query 11599 CATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 |||| |||| | | ||| || || |||||||| ||||||| || ||||| Sbjct 742 ---ACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAAT 798 Query 11656 ACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || ||| ||||| || | | ||| ||||| || || | ||||| ||||| Sbjct 799 GCAAGGTGCGTTTTCCTTAGCCTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACC 858 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||||||||| || ||||| | | | ||| || || || ||| | |||||| Sbjct 859 AACAAACATTTCAACAAACTCAGAACCTGAGATAGAGAAAAAAGGAACACCAGCTTCACC 918 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || || || || || |||||||| || ||||| Sbjct 919 AGCAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGG 957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625495041184800