Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq322356 123 3e-23 >seq322356 Length=2453 Score = 123 bits (136), Expect = 3e-23 Identities = 308/462 (67%), Gaps = 12/462 (3%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9615 ||| || ||||| | | || || || || | |||| ||||| || | | ||||| Sbjct 625 ATCGAGAATATCTGCCCTGTTAGTTGCTGCAACCACAATGATACCAGTGTTACCCTCAAA 684 Query 9616 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9675 ||||||||| ||||||||||| || |||| || ||||| | ||||||||| || Sbjct 685 ACCATCCATTTCTGTCAAAAGCTGATTAAGGGTCTGTTCTCTTTCATCATTGCCT---CC 741 Query 9676 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 9732 |||| |||| | | ||| ||| || |||||||| ||||||| || || ||||| Sbjct 742 ACCAATTCCAGTTCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAATACAATGCA 801 Query 9733 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 ||| ||||| ||| |||| ||| ||||| || || || || || |||||| Sbjct 802 AGGTGCGTTTTCCTTAGC--CTTCTTAAAAAGATCACGGACTCGAGAAGCACCAACACCA 859 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849 |||||||| || ||||| | | | | | || | || || || ||| || |||||| Sbjct 860 ACAAACATTTCAACAAACTCAGAACCTG-AGATAGAGAAAAAAGGAACACCAGCTTCACC 918 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 ||||| || || || |||||||| || || ||||| || | || || | || Sbjct 919 AGCAATTGCCTTCGCTAGCAGAGTCTTTCCAGTTCCTGGAGGGCCAACAAGAAGAACCCC 978 Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 9969 | ||||| || ||| || | |||||||||| | ||| | || ||||| | Sbjct 979 TTTAGGAATGCGAGCTCCAACAGCAGTGAATCTCTCAGGCTTCTTTAAGAACTCCACCAC 1038 Query 9970 TTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 ||| | || || | ||||| | || | ||| ||||||| Sbjct 1039 TTCCACAAAATCCTGCTTGGCTTCATCCACCCCAGCAACATC 1080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 580904696126120