Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq92779 91.5 2e-13 >seq92779 Length=4311 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 185039 TGGTATGGATTAGCAACTGCACATGACTTTGAGAGTCATGACAATATGACAGAAGAGAAG 185098 |||||||| | || || |||||||| | |||| |||||| |||| | || || | | Sbjct 3029 TGGTATGGTATTGCTACGACACATGACCTCGAGAATCATGATGATATATCTGAGGA-ACG 3087 Query 185099 T-TATATCAAAAATTATTTGCTACACACTTTGGTCATCTTGCAATTATCTTTCTATGGGT 185157 | | ||||| || | |||||| | || || || | ||||| || ||||| ||| Sbjct 3088 TCTTTATCAGAATATTTTTGCTTC----TTCGGGCAATTAGCAATAATTTTTCTGTGGAC 3143 Query 185158 TGCAGGTAATTTAATTCATATAGCATGGCAAGGTAACTTTGAACAGTTTGTAGCAGACCC 185217 | | || ||| | ||||| |||| ||||||| | ||||| | ||| || || Sbjct 3144 TTCTGGAAATCTGTTTCATGTAGCTTGGCAAGTATATTTTGAGGCATGGGTACAGGATCC 3203 Query 185218 ACAACATGTGATACCTATAGCACATAGAATATGGGATCCTCATTTTGGTCAA 185269 |||||| | ||| ||||| || ||| ||||||||||||||||||||| Sbjct 3204 TTTACATGTAAGACCAATAGCTCACGCAATTTGGGATCCTCATTTTGGTCAA 3255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628876526147080