Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq167275 102 6e-17 seq155405 89.7 4e-13 seq23575 82.4 5e-11 >seq167275 Length=2206 Score = 102 bits (112), Expect = 6e-17 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| |||||||| || ||||||||||| || ||| | || || |||||| | Sbjct 1034 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACATTGGAGGTGGAAAGCTC 975 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || ||||| || ||| ||| || ||||| || ||| |||| || Sbjct 974 TGATACAATTGACAAT--GTTAAAGCAAAGATCCAGGACAAGGAGGGTATTCCCCCAGAT 917 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 ||||| || | || ||||| || ||||| || || |||| | | | |||| | || || Sbjct 916 CAGCAGAGGCTCATCTTTGCAGGTAAACAGTTAGAGGACGGAAGAACTCTTG-CAGACTA 858 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| ||||| || || ||||| |||||| | ||| ||||||| || Sbjct 857 CAACATTCAAAAGGAATCAACATTGCACTTGGTTCTCCGTCTGCGTGGTGG 807 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| |||||||| ||| | || |||||| |||||| | || || |||||| | Sbjct 806 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 747 Query 27849 CGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| || | ||| ||||| || || ||||||||||| |||| || Sbjct 746 AGACACAATTGATAAT--GTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCAGAC 689 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || ||||| ||||| || | || || | | | || | |||||| Sbjct 688 CAGCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGATGGTAGGACACTGGCAGATTAC 629 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || ||| ||| |||||||||| | ||| | ||||| || Sbjct 628 AACATACAGAAGGAGTCAACTCTGCATTTGGTGCTCCGTCTACGTGGTGG 579 >seq155405 Length=1148 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| || || ||||||||||| || || | || || |||||| | Sbjct 412 AATGCAGATCTTTGTAAAGACGCTTACTGGGAAGACAATCACCCTGGAGGTGGAAAGCTC 353 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || || || ||||| ||||| || || ||||| || ||| |||| || Sbjct 352 CGATACAATTGACAAT--GTCAAGGCGAAGATCCAGGACAAGGAGGGTATTCCCCCAGAT 295 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 ||||| || | || ||||| || ||||| ||||| |||| | | | |||| | || || Sbjct 294 CAGCAGAGGCTCATCTTTGCAGGTAAACAGTTGGAGGACGGAAGAACTCTTG-CAGACTA 236 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||| ||||| || || ||||| |||||| | || ||||||| || Sbjct 235 CAACATTCAAAAGGAATCAACCTTGCACTTGGTTCTCCGACTGCGTGGTGG 185 >seq23575 Length=1941 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/230 (69%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| ||| | ||||| || || || | || || || ||| || Sbjct 1619 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTGGAGGTGGAGAGCTCC 1678 Query 27850 G--ACGATGTACAATCGGTCAAA-CAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || ||||| |||||| | || | || || || ||| | ||| ||| Sbjct 1679 GATACCATTGACAAT--GTCAAAGCCAAGGTTTCAAGATAAGGAGGGTATCCCGCCGGAT 1736 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 |||||| |||| || || |||||||| || ||||| || | || | ||| ||||||| Sbjct 1737 CAGCAAAGGTTGATCTTCGCCGGAAAGCAGTTGGAGGATGGTCGTACTTTGGCCGATTAT 1796 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| || ||| || |||| | ||| | ||| | ||||| || Sbjct 1797 AATATCCAGAAGGAGTCTACCCTGCACCTTGTTCTTCGTCTCCGTGGTGG 1846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354460818478101