Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq16442 102 7e-17 seq155405 95.1 1e-14 seq20182 91.5 1e-13 seq167275 87.8 2e-12 >seq16442 Length=1968 Score = 102 bits (112), Expect = 7e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || || || | Sbjct 431 GCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCC 372 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || |||||||| || || || || || ||||||||||| | || | || ||| || Sbjct 371 GTCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 312 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 ||| ||| || || | | | | || ||| |||||||| |||| |||||| Sbjct 311 GTCTTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCCACCTCCAACGTGAT 252 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGCCG 39294 | || ||||| || ||||| || ||||| |||||||| |||||| Sbjct 251 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTGACGCCG 206 >seq155405 Length=1148 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || || ||| ||||| ||||| ||||||||||| || || | || || Sbjct 430 CACCAGGTGAAGAGTAGACTCCTTTTGGATATTGTAATCGGCAAGGGTGCGGCCATCCTC 489 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||| ||||| || || | |||||| || | ||| | || ||| |||||| Sbjct 490 TAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGTATGCCCTCCTTGTCCTG 549 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || |||| | | | ||||| ||| || |||| ||||| | || Sbjct 550 GATCTTTGCCTTGACATTATCGATTGTATCAGAACTCTCAACCTCCAATGTGATGGTCTT 609 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||||||||| ||||| Sbjct 610 CCCTGTGAGAGTCTTAACAAAGATCTGCAT 639 >seq20182 Length=796 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || ||| || || || || ||||| ||||| ||||| | || || Sbjct 619 CACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCAAGAGTTCGGCCATCCTC 678 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192 |||||| ||||| ||||| || |||||||||||||| | ||| | | ||| |||||| Sbjct 679 AAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 736 >seq167275 Length=2206 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||| || || ||| ||||||||| ||||| ||||| || || || || | || || Sbjct 1052 CACCAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCTGCGAGCGTACGGCCATCCTC 1111 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||||||||| ||||| || || | |||||| || | ||| | || ||| |||||| | Sbjct 1112 TAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGGATGCCCTCCTTGTCC-T 1170 Query 39195 GATTTTCTG-TTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250 || | | || |||| | | | || || ||| ||| || |||| ||||| Sbjct 1171 GAATCTTTGCCTTGACATTATCGATTGTGTCAGAGCT---CTCAACCTCCAATGTGATGG 1227 Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || || || || || |||||||| ||||| Sbjct 1228 TCTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 1261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427853813579819