Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq16442 102 7e-17
seq155405 95.1 1e-14
seq20182 91.5 1e-13
seq167275 87.8 2e-12
>seq16442
Length=1968
Score = 102 bits (112), Expect = 7e-17
Identities = 158/226 (70%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128
||| | ||||| || || || ||| || || || || || ||||| || || || |
Sbjct 431 GCGGAGCACCAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGAGTCCGGCC 372
Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188
||| || |||||||| || || || || || ||||||||||| | || | || ||| ||
Sbjct 371 GTCCTCGAGCTGTTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 312
Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248
||| ||| || || | | | | || ||| |||||||| |||| ||||||
Sbjct 311 GTCTTGGATCTTGGCCTTCACATTGTCGATGGTGTCGGAGGACTCCACCTCCAACGTGAT 252
Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACGCCG 39294
| || ||||| || ||||| || ||||| |||||||| ||||||
Sbjct 251 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTTGACGCCG 206
>seq155405
Length=1148
Score = 95.1 bits (104), Expect = 1e-14
Identities = 147/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| || || || ||| ||||| ||||| ||||||||||| || || | || ||
Sbjct 430 CACCAGGTGAAGAGTAGACTCCTTTTGGATATTGTAATCGGCAAGGGTGCGGCCATCCTC 489
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||||||||| ||||| || || | |||||| || | ||| | || ||| ||||||
Sbjct 490 TAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGTATGCCCTCCTTGTCCTG 549
Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254
||| || |||| | | | ||||| ||| || |||| ||||| | ||
Sbjct 550 GATCTTTGCCTTGACATTATCGATTGTATCAGAACTCTCAACCTCCAATGTGATGGTCTT 609
Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
|| || || || ||||||||||| |||||
Sbjct 610 CCCTGTGAGAGTCTTAACAAAGATCTGCAT 639
>seq20182
Length=796
Score = 91.5 bits (100), Expect = 1e-13
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||||||| || || ||| || || || || ||||| ||||| ||||| | || ||
Sbjct 619 CACCAAATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCAAGAGTTCGGCCATCCTC 678
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCC 39192
|||||| ||||| ||||| || |||||||||||||| | ||| | | ||| ||||||
Sbjct 679 AAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC 736
>seq167275
Length=2206
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/214 (70%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134
||||| || || ||| ||||||||| ||||| ||||| || || || || | || ||
Sbjct 1052 CACCAGGTGGAGGGTGGACTCTTTTTGGATATTGTAATCTGCGAGCGTACGGCCATCCTC 1111
Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194
||||||||||| ||||| || || | |||||| || | ||| | || ||| |||||| |
Sbjct 1112 TAGCTGTTTGCCGGCAAAGATGAGCCTCTGCTGATCTGGGGGGATGCCCTCCTTGTCC-T 1170
Query 39195 GATTTTCTG-TTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATAC 39250
|| | | || |||| | | | || || ||| ||| || |||| |||||
Sbjct 1171 GAATCTTTGCCTTGACATTATCGATTGTGTCAGAGCT---CTCAACCTCCAATGTGATGG 1227
Query 39251 TTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284
| || || || || || || |||||||| |||||
Sbjct 1228 TCTTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 1261
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427853813579819
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |