Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq314856 104 3e-17
seq320171 100 4e-16
>seq314856
Length=966
Score = 104 bits (114), Expect = 3e-17
Identities = 156/222 (70%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218
|| |||||||| | ||| | ||| || | |||| |||||| || ||| ||||| || ||
Sbjct 75 CCCCCCTGATCAACATAACGGGCAGTATCATTAAAAACTCGCAGCATAGGAATGATGCCA 134
Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278
|| ||||| |||||||||||| ||||||||| ||| | || ||||| || || ||
Sbjct 135 TTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGAATGTTGTGAACAGAG 194
Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338
| || ||||| || || || || | ||| || ||||| ||||| || ||
Sbjct 195 ACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTCAAAGTATCATATATG 254
Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380
|| || || || ||||| ||||| | ||| || ||||||
Sbjct 255 CCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 296
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
||||| | |||||| | || ||||| ||||| || ||||| | ||| | |||| |
Sbjct 420 GTTCCAGAATTAAAAAGGGTAGGAGAGGCATGAGTGAACCACCGCTGAGACATGAGATGG 479
Query 78459 TATGTTTCAATAGCTGATTCTATGTCC-CATTGATGAATTCCTACCGCTACACGCATCAA 78517
||||||| ||| | ||||| || || | ||| || ||||| || || || | ||| |
Sbjct 480 TATGTTTTGATAACAGATTCAATATCATCCTTG-TGTATTCCAACAGCAACCCTCATTAG 538
Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577
|||||||||||| || || || ||| | | || || | |||||| | || |
Sbjct 539 CATATGCTGAGGCCTCTCTACAACCTTCCCTTGAACCTTTAAGAGGTATGACCTCTCAAG 598
Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625
||| || |||||||| |||| || |||||| | || ||||| ||
Sbjct 599 AGTCTTGAAACCAAAGTAGTCATAGTCAAAGTCCCGATCATAAATGAT 646
>seq320171
Length=1371
Score = 100 bits (110), Expect = 4e-16
Identities = 127/172 (74%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956
|||||||||||| |||| |||||| |||||||| || ||||| || |||| ||
Sbjct 945 CTCTCTTTCATAACGAGTGTATAGCTCTTCAAATTTTTCACCCCAGCAGTCTGCCAACCC 1004
Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015
|| | ||||| || || | |||||||| || |||| | | || ||||| |||||| |
Sbjct 1005 TGGAGACTCATTAGGACAAAATAATGACCAATCTCCAT-TGCTTTCAACTCTTTTCATGA 1063
Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067
| |||||||| | ||| |||||| ||| ||||| || | ||| | |||||
Sbjct 1064 ACAGATCAGGCACCCAAAGAGCATAAAAAAGATCACGAGCTCTGTTCTCTTC 1115
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 691862659332320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |