Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq314856 140 5e-28
seq320171 95.1 2e-14
>seq314856
Length=966
Score = 140 bits (154), Expect = 5e-28
Identities = 164/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813
|| |||||||| | ||| | |||||| | |||| |||||| || ||| ||||| |||||
Sbjct 75 CCCCCCTGATCAACATAACGGGCAGTATCATTAAAAACTCGCAGCATAGGAATGATGCCA 134
Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873
|| ||||| |||||||||||| ||||||||| ||| |||||||| || || |||
Sbjct 135 TTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGAATGTTGTGAACAGAG 194
Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933
| || ||||| || || ||| ||| | |||||| ||||| || ||||| |||
Sbjct 195 ACACCAATTCCCCCAGCTGATTTGCTGATGACAGCACATTCCTTCAAAGTATCATATATG 254
Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975
|| || || |||||||| ||||| | ||| || ||||||
Sbjct 255 CCTTCAATGCTATCATCTTTCATGCATACAAGGAAGCAGCTA 296
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
||||| | |||||| | |||||||| |||||||||||||| | ||| | |||| |
Sbjct 420 GTTCCAGAATTAAAAAGGGTAGGAGAGGCATGAGTGAACCACCGCTGAGACATGAGATGG 479
Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112
||||||| ||||| | ||| ||||| | ||| || ||||| ||||| || | ||| |
Sbjct 480 TATGTTTTGATAACAGATTCAATATCATCCTTG-TGTATTCCAACAGCAACCCTCATTAG 538
Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172
|||||||||||| | |||||| ||| | | || || | |||||| | || |
Sbjct 539 CATATGCTGAGGCCTCTCTACAACCTTCCCTTGAACCTTTAAGAGGTATGACCTCTCAAG 598
Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220
||| || |||||||| |||| || |||||| | || ||||| ||
Sbjct 599 AGTCTTGAAACCAAAGTAGTCATAGTCAAAGTCCCGATCATAAATGAT 646
>seq320171
Length=1371
Score = 95.1 bits (104), Expect = 2e-14
Identities = 125/170 (74%), Gaps = 4/170 (2%)
Strand=Plus/Plus
Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551
|||||||||||| | || |||| | |||||||| || ||||| || |||| ||
Sbjct 945 CTCTCTTTCATAACGAGTGTATAGCTCTTCAAATTTTTCACCCCAGCAGTCTGCCAACCC 1004
Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610
||| | ||||| ||||| | |||||||| || |||| | | || ||| | |||||| |
Sbjct 1005 TGGAGACTCATTAGGACAAAATAATGACCAATCTCCAT-TGCTTTCAACTCTTTTCATGA 1063
Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCT 76660
| |||||||| | ||| |||||| ||| ||||| || | ||| |||||
Sbjct 1064 ACAGATCAGGCACCCAAAGAGCATAAAAAAGATCACGAGCTCT--GTTCT 1111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 710054474756160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |