Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06] 323,163 sequences; 214,184,023 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq165556 86.0 8e-12 >seq165556 Length=2133 Score = 86.0 bits (94), Expect = 8e-12 Identities = 125/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 171005 TCTTG-ATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGTGCTT 171063 ||||| || | ||||| | |||||| |||| || |||||| || | ||||| || | Sbjct 1544 TCTTGGATTCAGCTGAGAATGCAGGAGTTGAGCTGCCCTATTCTTGCAGGGCTGGGGCAT 1603 Query 171064 GTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCTTTCC 171123 | || |||||||| || || || | ||||||||||| || || ||| || |||| Sbjct 1604 GCTCCACCTGTGCAGGAAAGATGGTAGCAGGTTCTGTTGACCAGTCTGATGGTTCCTTCC 1663 Query 171124 TTGATGATGATCAGATTGAATCAGGTTTCATT-CTGACCTGCGTCTCATATCC 171175 ||||||| | || | |||| ||| || || |||||||| |||||||| || Sbjct 1664 TTGATGACAACCA-AATGAAGGAGGGTTATTTGCTGACCTGTGTCTCATACCC 1715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 619557523291560