Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Fragaria_20orientalis_20[genbank_20GCA_5F000517285.1_202013-12-06]
323,163 sequences; 214,184,023 total letters
Query= NC_031761.1
Length=131855
Score E
Sequences producing significant alignments: (Bits) Value
seq55815 107 2e-18
seq167275 96.9 3e-15
seq23575 87.8 2e-12
seq1583 86.0 5e-12
>seq55815
Length=911
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
|||||||| |||||||| || | |||||||||||||| | |||||| |||| |
Sbjct 134 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCATTGTGGAAGTGGAAAGCTCT 193
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
|| | ||| | || ||| |||||| ||||| || || ||||| || |||
Sbjct 194 GACACCATTGATAATGTGAAAGCTAAAATTCAAGACAAGGAGGGTATTCCCCCAGACCAA 253
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|||||| | |||| ||| ||||| || | || ||| | || | | || ||||||
Sbjct 254 CAAAGGTTGATTTTTGCAGGCAAGCAGCTTGAGGATGGAAGGACACTTGTTGACTATAAT 313
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| ||||| || || || || || |||||| | ||||||||||||||
Sbjct 314 ATTCAAAAGGAGTCCACTCTGCACTTAGTGCTTCGTCTGCGCGGTGG 360
>seq167275
Length=2206
Score = 96.9 bits (106), Expect = 3e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158
||||||||| ||||| || || ||||| || ||||| ||||| ||||| |||| |
Sbjct 806 AATGCAAATCTTTGTGAAGACTTTGACAGGGAAAACTATTACTTTGGAAGTGGAAAGCTC 747
Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218
|| | ||| | || || || ||| |||||||||||| ||||| || ||
Sbjct 746 AGACACAATTGATAATGTCAAGGCGAAGATTCAGGACAAAGAAGGCATTCCCCCAGACCA 687
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278
|| ||||| || | ||| || || || | || ||| || || |||| ||||| ||
Sbjct 686 GCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAGGATGGTAGGACACTGGCAGATTACAA 627
Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
||||| || || || || || ||||| ||| | ||||| || |||||
Sbjct 626 CATACAGAAGGAGTCAACTCTGCATTTGGTGCTCCGTCTACGTGGTGG 579
>seq23575
Length=1941
Score = 87.8 bits (96), Expect = 2e-12
Identities = 157/228 (69%), Gaps = 1/228 (0%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
||||| |||||||| || || ||||| ||||| ||||| ||| |||| ||| | |
Sbjct 1619 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACCATCACCCTGGAGGTGGAGAGCTCC 1678
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG-ATCA 111218
||| | ||| | | || ||| || || | ||| ||| ||||| || ||||
Sbjct 1679 GATACCATTGACAATGTCAAAGCCAAGGTTTCAAGATAAGGAGGGTATCCCGCCGGATCA 1738
Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278
|||||| | || | || || || || ||||| ||| | ||| |||||||||||||
Sbjct 1739 GCAAAGGTTGATCTTCGCCGGAAAGCAGTTGGAGGATGGTCGTACTTTGGCCGATTATAA 1798
Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
||| || || || ||||| || || | || | ||||| || |||||
Sbjct 1799 TATCCAGAAGGAGTCTACCCTGCACCTTGTTCTTCGTCTCCGTGGTGG 1846
>seq1583
Length=2309
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159
|||||||| |||||||| || | |||||||||||||| || ||||| |||| |
Sbjct 134 ATGCAAATCTTTGTCAAGACCCTTACCGGCAAAACCATCACTTTGGAAGTGGAAAGCTCT 193
Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219
|| | | | | || ||| |||||| || || || || ||||| || ||
Sbjct 194 GACACCATAGATAATGTGAAAGCTAAAATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 253
Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279
|| ||| | |||| ||| || || || | || ||| | || | || || ||||||
Sbjct 254 CAGAGGTTGATTTTTGCAGGTAAGCAGCTTGAGGATGGAAGGACACTTGCAGACTATAAT 313
Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326
|| ||||| || || || || || || ||| | ||||||||||||||
Sbjct 314 ATTCAAAAGGAGTCCACTCTGCACTTGGTGCTTCGTCTGCGCGGTGG 360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420149875893688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |